CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71636
CDX84881
CDX91560
CDY05827
CDY16348
CDY45814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	CDX71636	AT5G50850.1	21798944
AT1G01090.1	CDX84881	AT5G50850.1	21798944
AT1G01090.1	CDX91560	AT5G50850.1	21798944
AT1G01090.1	CDY05827	AT5G50850.1	21798944
AT1G01090.1	CDY16348	AT5G50850.1	21798944
AT1G01090.1	CDY45814	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032619.1-P	Field mustard	plastid	100.0	100.0
CDY37473	Canola	plastid	98.35	98.82
CDY37427	Canola	cytosol, mitochondrion, plastid	35.76	98.7
CDY37428	Canola	cytosol	33.65	97.28
CDX90009	Canola	plastid	96.24	96.01
CDY15202	Canola	plastid	95.53	94.64
AT1G01090.1	Thale cress	plastid	93.41	92.76
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.35	92.23
PGSC0003DMT400035288	Potato	plastid	81.65	79.41
VIT_15s0048g02580.t01	Wine grape	plastid	80.47	78.98
KRH68960	Soybean	plastid	77.41	78.71
KRH47800	Soybean	plastid	79.53	78.24
KRH06359	Soybean	nucleus	79.29	78.01
KRG97240	Soybean	plastid	78.12	77.75
Solyc12g009410.1.1	Tomato	plastid	79.76	77.05
Solyc12g009400.1.1	Tomato	plastid	79.53	76.82
PGSC0003DMT400007571	Potato	plastid	79.29	76.59
TraesCS2D01G010700.1	Wheat	golgi	74.82	75.71
TraesCS2B01G012500.1	Wheat	plastid	74.59	75.3
TraesCS2A01G010100.1	Wheat	plastid	74.35	75.06
Os04t0119400-01	Rice	plastid	73.65	73.65
Zm00001d004473_P001	Maize	plastid	73.88	73.36
EES10385	Sorghum	plastid	74.12	73.09
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	48.94	72.98
GSMUA_Achr11P...	Banana	plastid	73.41	72.56
HORVU2Hr1G001600.1	Barley	plastid	74.12	68.93
CDY38784	Canola	mitochondrion	33.41	36.22
CDY11622	Canola	mitochondrion	33.18	35.97
CDY24500	Canola	mitochondrion	32.71	35.73
CDY33613	Canola	mitochondrion	32.47	35.48
CDY16236	Canola	mitochondrion	32.24	35.4
CDY70124	Canola	cytosol	12.0	35.17
CDY40292	Canola	mitochondrion	32.0	34.43
CDY28458	Canola	mitochondrion	32.0	34.43
CDY31596	Canola	mitochondrion	5.18	32.84
CDY55062	Canola	cytosol	14.35	32.45
GSMUA_Achr5P18750_001	Banana	plastid	67.76	31.93
CDY14675	Canola	cytosol	32.0	30.91
CDY55064	Canola	plasma membrane	21.65	28.05
CDX81122	Canola	plastid	22.12	20.13
CDX78354	Canola	plastid	22.35	20.13
CDY50237	Canola	mitochondrion	21.41	19.28
CDY65512	Canola	mitochondrion	21.41	19.28
CDX96593	Canola	mitochondrion	21.18	19.11
CDY65109	Canola	mitochondrion	20.94	18.82

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	GO:A0A078H163
UniProt:A0A078H163	EnsemblPlants:CDY32445	ProteinID:CDY32445	ProteinID:CDY32445.1	ncoils:Coil	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00052412001	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI00025430F7
SEG:seg	:	:	:	:	:

Description

BnaA09g51510DPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078H163]

Coordinates

chrLK032295:+:41739..43581

Molecular Weight (calculated)

46893.4 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.277

Length

425 amino acids

Sequence
(BLAST)

001: MATAFSATLP LHGSSSQENR LLLPPTRLPP PPSSFLGSTR SLPFRRLNHA HAARRSPVVA VQEIVKEKKP TNPLLITKEE GLVLYEDMIL GRSFEDMCAQ
101: MYYRGKMFGF VHLYNGQEAV STGFIKLLTK SDSVVSTYRD HVHALSKGVS ARAVMSELFG KVTGCCRGQG GSMHMFSKEH NMLGGFAFIG EGIPVATGAA
201: FTSKYKREVL KQDCDDVTVA FFGDGTCNNG QFYECLNMAA LYKLPIIFVV ENNLWAIGMS HLRSTSDPEI WKKGPAFGMP GVHVDGMDVL KVREVAKEAV
301: IRARRGEGPT LVECETYRFR GHSLADPDEL RDAAEKAKYA ARDPITALKK YLIENKLAKE GELKTIEKKI DELVEEAVEF ADASPQPGRS QLLENVFADP
401: KGFGIGPDGR YRCEDPKFTE GTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.