CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017912.1-P	Field mustard	mitochondrion	98.73	98.73
CDY50237	Canola	mitochondrion	98.73	98.73
CDX96593	Canola	mitochondrion	87.08	87.26
CDY65109	Canola	mitochondrion	87.08	86.89
AT1G21400.5	Thale cress	plastid	89.19	80.34
Solyc06g059850.1.1	Tomato	cytosol	55.72	69.21
VIT_18s0001g14980.t01	Wine grape	plastid	63.77	63.91
KRH64579	Soybean	endoplasmic reticulum	64.41	63.6
KRH53343	Soybean	mitochondrion	65.25	63.24
CDX78354	Canola	plastid	62.71	62.71
CDX81122	Canola	plastid	61.65	62.31
GSMUA_Achr3P18980_001	Banana	mitochondrion	59.96	61.52
TraesCS4B01G071500.1	Wheat	mitochondrion	60.38	61.16
TraesCS5B01G121400.3	Wheat	mitochondrion	60.59	60.98
TraesCS5D01G126700.1	Wheat	mitochondrion	60.38	60.77
PGSC0003DMT400063962	Potato	mitochondrion, plastid	60.59	60.72
TraesCS5A01G120000.3	Wheat	mitochondrion	60.17	60.55
Solyc06g059840.2.1	Tomato	mitochondrion	58.47	60.53
Os12t0183100-01	Rice	mitochondrion	62.29	60.49
PGSC0003DMT400033905	Potato	mitochondrion	58.26	60.31
HORVU5Hr1G034820.3	Barley	mitochondrion	59.53	59.91
Solyc04g063350.2.1	Tomato	mitochondrion	59.32	59.32
Zm00001d023694_P001	Maize	mitochondrion	61.23	59.22
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	32.84	56.78
Solyc12g055890.1.1	Tomato	mitochondrion	35.59	56.57
KXG23145	Sorghum	mitochondrion	60.59	56.52
Solyc12g055880.1.1	Tomato	cytosol	15.25	53.33
CDY70124	Canola	cytosol	9.75	31.72
CDY31596	Canola	mitochondrion	4.45	31.34
CDY33613	Canola	mitochondrion	22.03	26.74
CDY55062	Canola	cytosol	10.59	26.6
CDY24500	Canola	mitochondrion	21.61	26.22
CDY38784	Canola	mitochondrion	21.19	25.51
CDY11622	Canola	mitochondrion	20.97	25.26
CDY28458	Canola	mitochondrion	20.55	24.56
CDY40292	Canola	mitochondrion	20.34	24.3
CDY16236	Canola	mitochondrion	19.49	23.77
CDY37427	Canola	cytosol, mitochondrion, plastid	7.63	23.38
CDY37473	Canola	plastid	19.28	21.51
CDY32445	Canola	plastid	19.28	21.41
CDX90009	Canola	plastid	19.07	21.13
CDY15202	Canola	plastid	19.07	20.98
CDY14675	Canola	cytosol	19.07	20.45
CDY37428	Canola	cytosol	6.36	20.41
CDY55064	Canola	plasma membrane	13.35	19.21

Protein Annotations

EnsemblPlants:CDY65512	EnsemblPlantsGene:GSBRNA2T00046738001	Gene3D:3.40.50.970	GO:A0A078JJI9	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	ProteinID:CDY65512	ProteinID:CDY65512.1	SUPFAM:SSF52518
UniParc:UPI0004EDD0BC	UniProt:A0A078JJI9	MapMan:4.2.7.2.1.1	:	:	:

Description

BnaCnng47410DBnaCnng47410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJI9]

Coordinates

chrLK034820:-:16629..19687

Molecular Weight (calculated)

53343.8 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.478

Length

472 amino acids

Sequence
(BLAST)

001: MAMWFARSRN LVSSLRQNLG LSAILIKRNH SSPRPVFTNY ELSSKVFLDP STSFRHESTA VESQPDLVQQ SDHEDDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL NEHGKIISDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPED VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNQHNY FTVSSPIATQ LPQAAGVGYA LKMEKKNACA VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEAMTYR VGHHSTSDDS TKYREADEIQ YWKMSRNPVN RFKKWVQDNG
401: WWSEEDESKL RSSTRKQLLQ AIQAAEKWEK QPLTELFNDV YDVKTKNLEE QEVGLKALVE KQPQDYPTGF HI

Best Arabidopsis Sequence Match ( AT1G21400.5 )
(BLAST)

001: MTCQVRQGNT CTCRPSNPLP LNIVKNDNFS LLLLYSSPFS SLLLFFVHFL TDMAIWFARS KTLVSSLRHN LNLSTILIKR DYSHRPIFYT TSQLSSTAYL
101: SPFGSLRHES TAVETQADHL VQQIDEVDAQ ELDFPGGKVG YTSEMKFIPE SSSRRIPCYR VLDEDGRIIP DSDFIPVSEK LAVRMYEQMA TLQVMDHIFY
201: EAQRQGRISF YLTSVGEEAI NIASAAALSP DDVVLPQYRE PGVLLWRGFT LEEFANQCFG NKADYGKGRQ MPIHYGSNRL NYFTISSPIA TQLPQAAGVG
301: YSLKMDKKNA CTVTFIGDGG TSEGDFHAGL NFAAVMEAPV VFICRNNGWA ISTHISEQFR SDGIVVKGQA YGIRSIRVDG NDALAVYSAV RSAREMAVTE
401: QRPVLIEMMT YRVGHHSTSD DSTKYRAADE IQYWKMSRNP VNRFRKWVED NGWWSEEDES KLRSNARKQL LQAIQAAEKW EKQPLTELFN DVYDVKPKNL
501: EEQELGLKEL VKKQPQDYPP GFHV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.