Factsheet for Solyc06g059850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055880.1.1	Tomato	cytosol	23.42	65.93
Solyc04g063350.2.1	Tomato	mitochondrion	78.16	62.92
Solyc04g025710.1.1	Tomato	cytosol	17.63	62.04
Solyc06g059840.2.1	Tomato	mitochondrion	71.32	59.43
VIT_18s0001g14980.t01	Wine grape	plastid	73.16	59.02
TraesCS4B01G071500.1	Wheat	mitochondrion	72.11	58.8
TraesCS5D01G126700.1	Wheat	mitochondrion	72.37	58.64
TraesCS5B01G121400.3	Wheat	mitochondrion	72.37	58.64
TraesCS5A01G120000.3	Wheat	mitochondrion	72.11	58.42
Zm00001d023694_P001	Maize	mitochondrion	75.0	58.4
HORVU5Hr1G034820.3	Barley	mitochondrion	71.84	58.21
Os12t0183100-01	Rice	mitochondrion	73.42	57.41
GSMUA_Achr3P18980_001	Banana	mitochondrion	69.21	57.17
Solyc12g055890.1.1	Tomato	mitochondrion	44.47	56.9
KXG23145	Sorghum	mitochondrion	75.26	56.52
CDY65512	Canola	mitochondrion	69.21	55.72
KRH64579	Soybean	endoplasmic reticulum	70.0	55.65
Bra017912.1-P	Field mustard	mitochondrion	68.95	55.51
CDY50237	Canola	mitochondrion	68.95	55.51
Solyc05g056480.2.1	Tomato	plastid	68.16	55.46
Bra016423.1-P	Field mustard	mitochondrion	68.68	55.41
CDX96593	Canola	mitochondrion	68.42	55.2
KRH53343	Soybean	mitochondrion	70.53	55.03
CDY65109	Canola	mitochondrion	67.89	54.55
AT1G21400.5	Thale cress	plastid	71.58	51.91
AT5G34780.1	Thale cress	cytosol, mitochondrion	37.11	38.63
Solyc05g006520.2.1	Tomato	plastid	25.79	25.06
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	25.53	24.81
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	16.32	21.75
Solyc12g009410.1.1	Tomato	plastid	24.21	20.91
Solyc12g009400.1.1	Tomato	plastid	24.21	20.91

Protein Annotations

EnsemblPlants:Solyc06g059850.1.1	EnsemblPlantsGene:Solyc06g059850.1	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	SUPFAM:SSF52518	UniParc:UPI0002765D86	UniProt:K4C6H1	MapMan:4.2.7.2.1.1

Description

No Description!

Coordinates

chr6:-:37742330..37744535

Molecular Weight (calculated)

43291.4 Da

IEP (calculated)

6.932

GRAVY (calculated)

-0.443

Length

380 amino acids

Sequence
(BLAST)

001: MKFISESFEK RLPCYRVLDD DGDLIPGSIF EQVKKGLAVN MYSTMVALQI MDTIFYEAQR QGRLSFYLTS TGEEAINIAS AAALTSDDIV LPQYREPGVL
101: LWRGFTLEEF ADQLFGNKND YGKGRQMPIH YGSNKLNYFT VSSPLATQLP QAAGVAYSLK MDKKEACVVV YFGDGSTSEG DFHAGLNFAA VMESPVIFLC
201: RNNGWAISTP VTEQFRSDGI AIKGQAYGIR SIRVDGNDAL AVYSAIRAAR QMAIKEQRPI LVEAMTYRVS HHSTSDDSTK YRCVKEIEQW RTEKNPITRF
301: RKWIQRNDWW GDQNETELRG NIRKQVVEAI QTAEKVEKPP LRDLFGDVYD KIPSNLQEQE RFIRDSTKRY PKEYPFNVPV

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.