Factsheet for Solyc12g055890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g025710.1.1	Tomato	cytosol	20.88	57.41
Solyc06g059850.1.1	Tomato	cytosol	56.9	44.47
Solyc06g059840.2.1	Tomato	mitochondrion	57.24	37.28
TraesCS4B01G071500.1	Wheat	mitochondrion	57.58	36.7
TraesCS5A01G120000.3	Wheat	mitochondrion	57.91	36.67
TraesCS5B01G121400.3	Wheat	mitochondrion	57.91	36.67
TraesCS5D01G126700.1	Wheat	mitochondrion	57.91	36.67
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	33.67	36.63
HORVU5Hr1G034820.3	Barley	mitochondrion	57.58	36.46
VIT_18s0001g14980.t01	Wine grape	plastid	56.57	35.67
CDY65512	Canola	mitochondrion	56.57	35.59
CDY50237	Canola	mitochondrion	56.57	35.59
Bra017912.1-P	Field mustard	mitochondrion	56.57	35.59
Solyc04g063350.2.1	Tomato	mitochondrion	56.57	35.59
CDX96593	Canola	mitochondrion	55.89	35.24
Os12t0183100-01	Rice	mitochondrion	57.24	34.98
Bra016423.1-P	Field mustard	mitochondrion	55.22	34.82
Solyc05g056480.2.1	Tomato	plastid	54.55	34.69
CDY65109	Canola	mitochondrion	55.22	34.67
Zm00001d023694_P001	Maize	mitochondrion	56.9	34.63
GSMUA_Achr3P18980_001	Banana	mitochondrion	53.54	34.57
KRH64579	Soybean	endoplasmic reticulum	55.56	34.52
KRH53343	Soybean	mitochondrion	56.57	34.5
KXG23145	Sorghum	mitochondrion	56.9	33.4
AT1G21400.5	Thale cress	plastid	56.23	31.87
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	14.81	15.44
Solyc05g006520.2.1	Tomato	plastid	20.2	15.35
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	19.53	14.83
Solyc12g009400.1.1	Tomato	plastid	18.52	12.5
Solyc12g009410.1.1	Tomato	plastid	18.52	12.5
AT5G34780.1	Thale cress	cytosol, mitochondrion	14.48	11.78
Solyc12g055880.1.1	Tomato	cytosol	0.34	0.74

Protein Annotations

EnsemblPlants:Solyc12g055890.1.1	EnsemblPlantsGene:Solyc12g055890.1	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	SUPFAM:SSF52518	UniParc:UPI0002769D20	UniProt:K4DFS0	MapMan:50.1.2

Description

No Description!

Coordinates

chr12:-:61885219..61887091

Molecular Weight (calculated)

33689.3 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.333

Length

297 amino acids

Sequence
(BLAST)

001: MAIWISRSRR IFNHFVQRDC PLSLLHPRGS RPFSYFESKQ QEPQCYHEEE DYHVDIKHDE NQAMDFPGGK IPFVSQMKFI SESSETRLAC YRVLDNNGST
101: ISGSVFEQVK KGLAVKIYRN MVTLQIMDNV FDKAQKQGRL SLYMATVGEE VINIASVAAL TTHDIVLPQY REPGVLLWRG FTLKEFTNQL LGKKDDNGKG
201: RQMPIHYGSN KLNYFTVSST LATQLPQAAG VAYALKMDRK EACVVTYFGD GTSRDFHAAL NFAAVLETPV IFLCRNNGWA VSTPVNEQFR SINPKLN

Best Arabidopsis Sequence Match ( AT5G09300.4 )
(BLAST)

001: MALHLRSSFS SKSTLLNILR HNLGFGSRSH VTRHIRQILP HDPPLRGSQN PISRLCNTMA EPETLSSFVQ HEYANNHQVM DFPGGKVAFT PEIQFISESD
101: KERVPCYRVL DDNGQLITNS QFVQVSEEVA VKIYSDMVTL QIMDNIFYEA QRQGRLSFYA TAIGEEAINI ASAAALTPQD VIFPQYREPG VLLWRGFTLQ
201: EFANQCFGNK SDYGKGRQMP VHYGSNKLNY FTVSATIATQ LPNAVGAAYS LKMDKKDACA VTYFGDGGTS EGDFHAALNI AAVMEAPVLF ICRNNGWAIS
301: TPTSDQFRSN SFSFSLDVHT LYLVFFKTFG FANAFANTMA NR

Arabidopsis Description

2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.