Factsheet for Solyc05g056480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060275	Potato	mitochondrion	95.5	95.5
Solyc04g025710.1.1	Tomato	cytosol	18.42	79.63
Solyc06g059850.1.1	Tomato	cytosol	55.46	68.16
VIT_04s0044g01490.t01	Wine grape	mitochondrion	68.95	66.94
Bra006017.1-P	Field mustard	plastid	63.17	63.03
CDX78354	Canola	plastid	63.38	62.71
CDX81122	Canola	plastid	62.31	62.31
AT5G09300.1	Thale cress	plastid	62.95	62.29
KRH64030	Soybean	mitochondrion, plastid	62.74	61.81
GSMUA_Achr3P18980_001	Banana	mitochondrion	60.6	61.52
KRG99480	Soybean	cytosol	26.34	60.59
TraesCS4B01G071500.1	Wheat	mitochondrion	59.96	60.09
KRH53908	Soybean	cytosol	15.42	60.0
TraesCS5D01G126700.1	Wheat	mitochondrion	60.17	59.91
TraesCS5B01G121400.3	Wheat	mitochondrion	60.17	59.91
TraesCS5A01G120000.3	Wheat	mitochondrion	59.96	59.7
Zm00001d023694_P001	Maize	mitochondrion	61.46	58.81
Solyc04g063350.2.1	Tomato	mitochondrion	59.31	58.69
HORVU5Hr1G034820.3	Barley	mitochondrion	58.89	58.64
Os12t0183100-01	Rice	mitochondrion	60.6	58.23
Solyc12g055880.1.1	Tomato	cytosol	16.49	57.04
KXG23145	Sorghum	mitochondrion	61.24	56.52
Solyc06g059840.2.1	Tomato	mitochondrion	55.03	56.36
Solyc12g055890.1.1	Tomato	mitochondrion	34.69	54.55
Solyc05g006520.2.1	Tomato	plastid	23.13	27.62
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	23.13	27.62
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	14.56	23.86
Solyc12g009400.1.1	Tomato	plastid	20.56	21.82
Solyc12g009410.1.1	Tomato	plastid	20.56	21.82

Protein Annotations

EnsemblPlants:Solyc05g056480.2.1	EnsemblPlantsGene:Solyc05g056480.2	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152
GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380	PANTHER:PTHR43380:SF2
PFAM:PF00676	SUPFAM:SSF52518	UniParc:UPI000276591E	UniProt:K4C2X2	MapMan:4.2.7.2.1.1	:

Description

No Description!

Coordinates

chr5:+:65756688..65760660

Molecular Weight (calculated)

52857.7 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.376

Length

467 amino acids

Sequence
(BLAST)

001: MALLLSKSRK LICLKPKIGF LSSVYHNHTL ISPNLRTPFR ILGLNQSHFA YFRFGSTKAQ TQLNPMHSIH NDSQVLDFPG GEVKFTSHLN FIPETREERV
101: HCYRVLDDDG YPITNDFAQI EKEVALKIYT DMVTLQTMDT IFYEAQRQGR ISFYLTTVGE EAINIASAAA LKTDDFIFPQ YRESGVLLWR GFTIQEFANQ
201: LFGNKNDYGK GRQMPIHYGS NKHNYITVAS TVATQLPHAV GAAYALKMDA KNACTIVYFG DGGSSTGDFH AALNFAAVLD APVIFFCRNN GFAISTPVSD
301: QFRSDGVVTK GQGYGIRSIR VDGNDALAVF TAVHEARKMA VNECKPILVE ALTYRAGHHS TSDDSTKYRP AKEIEWWRRE RDPVSRFKKW IEREGWLNPQ
401: VESDLRSNIR KQVLQAIQVA EKQEKPPIKD VFTDVYDVSP ANLQEQEVSI RETVRKHPQD YPTDVPV

Best Arabidopsis Sequence Match ( AT5G09300.1 )
(BLAST)

001: MALHLRSSFS SKSTLLNILR HNLGFGSRSH VTRHIRQILP HDPPLRGSQN PISRLCNTMA EPETLSSFVQ HEYANNHQVM DFPGGKVAFT PEIQFISESD
101: KERVPCYRVL DDNGQLITNS QFVQVSEEVA VKIYSDMVTL QIMDNIFYEA QRQGRLSFYA TAIGEEAINI ASAAALTPQD VIFPQYREPG VLLWRGFTLQ
201: EFANQCFGNK SDYGKGRQMP VHYGSNKLNY FTVSATIATQ LPNAVGAAYS LKMDKKDACA VTYFGDGGTS EGDFHAALNI AAVMEAPVLF ICRNNGWAIS
301: TPTSDQFRSD GVVVKGRAYG IRSIRVDGND ALAMYSAVHT AREMAIREQR PILIEALTYR VGHHSTSDDS TRYRSAGEIE WWNKARNPLS RFRTWIESNG
401: WWSDKTESDL RSRIKKEMLE ALRVAEKTEK PNLQNMFSDV YDVPPSNLRE QELLVRQTIN SHPQDYPSDV PL

Arabidopsis Description

2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.