Factsheet for Solyc12g009410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g097680.2.1
Solyc06g072580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	Solyc03g097680.2.1	AT5G50850.1	21798944
AT1G01090.1	Solyc06g072580.2.1	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007571	Potato	plastid	98.86	98.86
Solyc12g009400.1.1	Tomato	plastid	97.95	97.95
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.05	94.17
CDY37427	Canola	cytosol, mitochondrion, plastid	31.59	90.26
CDY37428	Canola	cytosol	29.09	87.07
KRH68960	Soybean	plastid	77.5	81.58
VIT_15s0048g02580.t01	Wine grape	plastid	79.09	80.37
CDY37473	Canola	plastid	77.05	80.14
KRG97240	Soybean	plastid	77.73	80.09
CDY32445	Canola	plastid	77.05	79.76
Bra032619.1-P	Field mustard	plastid	77.05	79.76
AT1G01090.1	Thale cress	plastid	77.5	79.67
KRH47800	Soybean	plastid	77.95	79.4
CDX90009	Canola	plastid	76.59	79.11
Bra033286.1-P	Field mustard	plastid	76.59	79.11
KRH06359	Soybean	nucleus	77.5	78.94
CDY15202	Canola	plastid	76.14	78.09
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	49.77	76.84
GSMUA_Achr11P...	Banana	plastid	73.86	75.58
TraesCS2D01G010700.1	Wheat	golgi	72.05	75.48
TraesCS2A01G010100.1	Wheat	plastid	71.59	74.82
TraesCS2B01G012500.1	Wheat	plastid	71.36	74.58
Os04t0119400-01	Rice	plastid	70.91	73.41
Zm00001d004473_P001	Maize	plastid	71.36	73.36
EES10385	Sorghum	plastid	71.36	72.85
HORVU2Hr1G001600.1	Barley	plastid	71.14	68.49
Solyc05g006520.2.1	Tomato	plastid	32.05	36.06
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	31.59	35.55
GSMUA_Achr5P18750_001	Banana	plastid	66.59	32.48
Solyc06g059850.1.1	Tomato	cytosol	20.91	24.21
Solyc12g055880.1.1	Tomato	cytosol	7.27	23.7
Solyc04g063350.2.1	Tomato	mitochondrion	22.95	21.4
Solyc05g056480.2.1	Tomato	plastid	21.82	20.56
Solyc06g059840.2.1	Tomato	mitochondrion	20.91	20.18
Solyc04g025710.1.1	Tomato	cytosol	4.77	19.44
Solyc12g055890.1.1	Tomato	mitochondrion	12.5	18.52

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:K4DC29	PFAM:PF00676
PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	EnsemblPlantsGene:Solyc12g009410.1	EnsemblPlants:Solyc12g009410.1.1
InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0002769849	SEG:seg	:	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4DC29]

Coordinates

chr12:+:2687666..2690826

Molecular Weight (calculated)

48730.0 Da

IEP (calculated)

7.119

GRAVY (calculated)

-0.379

Length

440 amino acids

Sequence
(BLAST)

001: MAASASSFAA NNFLQPINST RSIDNNNKKT LLGNQLKDSS FFLGSAKKLY MKKPFSSQNS KSRSNGVFAV SEVVKNKKPN TDSSLSNLLI TKDEGLELYE
101: DMVLGRAFED MCAQMYYRGK MFGFVHLYNG QEAVSTGFIK LLKKEDSVVS TYRDHVHALS KGVPARQVMS ELFGKTTGCC RGQGGSMHMF SKEHNVLGGF
201: AFIGEGIPVA TGAAFTSKYR REVMKEADCD HVTMAFFGDG TCNNGQFFEC LNMAALWKLP IIFVVENNLW AIGMSHLRST SDPEIWKKGP AFGMPGVHVD
301: GMDVLKVREV AKEAVARARR GDGPTLVECE TYRFRGHSLA DPDELRDPAE KNHYAARDPI SALKKYMFEN NLASEAELKA IDKKIDELVE EAVEFADESP
401: HPVRSQLLEN VFADPKGFGI GPDGRYRCED PKFTEGTAHV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.