Factsheet for Solyc12g055880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	67.41	33.33
Solyc06g059850.1.1	Tomato	cytosol	65.93	23.42
AT5G34780.1	Thale cress	cytosol, mitochondrion	51.11	18.9
Solyc04g063350.2.1	Tomato	mitochondrion	60.74	17.37
TraesCS4B01G071500.1	Wheat	mitochondrion	57.78	16.74
Solyc06g059840.2.1	Tomato	mitochondrion	56.3	16.67
KRH53343	Soybean	mitochondrion	60.0	16.63
TraesCS5B01G121400.3	Wheat	mitochondrion	57.78	16.63
GSMUA_Achr3P18980_001	Banana	mitochondrion	56.3	16.52
Solyc05g056480.2.1	Tomato	plastid	57.04	16.49
Os12t0183100-01	Rice	mitochondrion	59.26	16.46
TraesCS5D01G126700.1	Wheat	mitochondrion	57.04	16.42
VIT_18s0001g14980.t01	Wine grape	plastid	57.04	16.35
KRH64579	Soybean	endoplasmic reticulum	57.78	16.32
KXG23145	Sorghum	mitochondrion	60.74	16.21
TraesCS5A01G120000.3	Wheat	mitochondrion	56.3	16.2
HORVU5Hr1G034820.3	Barley	mitochondrion	56.3	16.2
Zm00001d023694_P001	Maize	mitochondrion	57.78	15.98
CDX96593	Canola	mitochondrion	54.81	15.71
Bra016423.1-P	Field mustard	mitochondrion	54.07	15.5
CDY65512	Canola	mitochondrion	53.33	15.25
CDY50237	Canola	mitochondrion	53.33	15.25
Bra017912.1-P	Field mustard	mitochondrion	53.33	15.25
CDY65109	Canola	mitochondrion	52.59	15.01
AT1G21400.5	Thale cress	plastid	53.33	13.74
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	28.15	9.72
Solyc05g006520.2.1	Tomato	plastid	27.41	9.46
Solyc12g009400.1.1	Tomato	plastid	23.7	7.27
Solyc12g009410.1.1	Tomato	plastid	23.7	7.27
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	12.59	5.96
Solyc04g025710.1.1	Tomato	cytosol	0.74	0.93
Solyc12g055890.1.1	Tomato	mitochondrion	0.74	0.34

Protein Annotations

EnsemblPlants:Solyc12g055880.1.1	EnsemblPlantsGene:Solyc12g055880.1	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	SUPFAM:SSF52518	UniParc:UPI0002769D1F	UniProt:K4DFR9	MapMan:35.1

Description

No Description!

Coordinates

chr12:-:61883587..61884252

Molecular Weight (calculated)

15336.9 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.659

Length

135 amino acids

Sequence
(BLAST)

001: MVGDGIAIKG QAYGVQSIRV DGTDALAVYS ATRAAREMAI KEQKPIIVEL NRVSDHASSH DATQYRSNEE SEYWRRRCPV VLQALERAEE TEKPPLADLF
101: TDVYDQIPSN LQEQERFIRD AINKRPNEYS TNIPL

Best Arabidopsis Sequence Match ( AT5G09300.2 )
(BLAST)

001: MWTLNVQVMD FPGGKVAFTP EIQFISESDK ERVPCYRVLD DNGQLITNSQ FVQVSEEVAV KIYSDMVTLQ IMDNIFYEAQ RQGRLSFYAT AIGEEAINIA
101: SAAALTPQDV IFPQYREPGV LLWRGFTLQE FANQCFGNKS DYGKGRQMPV HYGSNKLNYF TVSATIATQL PNAVGAAYSL KMDKKDACAV TYFGDGGTSE
201: GDFHAALNIA AVMEAPVLFI CRNNGWAIST PTSDQFRSDG VVVKGRAYGI RSIRVDGNDA LAMYSAVHTA REMAIREQRP ILIEALTYRV GHHSTSDDST
301: RYRSAGEIEW WNKARNPLSR FRTWIESNGW WSDKTESDLR SRIKKEMLEA LRVAEKTEKP NLQNMFSDVY DVPPSNLREQ ELLVRQTINS HPQDYPSDVP
401: L

Arabidopsis Description

2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JL2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.