Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017912.1-P | Field mustard | mitochondrion | 80.53 | 89.41 |
| CDY50237 | Canola | mitochondrion | 80.53 | 89.41 |
| CDY65512 | Canola | mitochondrion | 80.34 | 89.19 |
| Solyc06g059850.1.1 | Tomato | cytosol | 51.91 | 71.58 |
| VIT_18s0001g14980.t01 | Wine grape | plastid | 58.4 | 64.97 |
| GSMUA_Achr3P18980_001 | Banana | mitochondrion | 55.34 | 63.04 |
| KRH64579 | Soybean | endoplasmic reticulum | 57.44 | 62.97 |
| KRH53343 | Soybean | mitochondrion | 58.02 | 62.42 |
| TraesCS4B01G071500.1 | Wheat | mitochondrion | 55.34 | 62.23 |
| TraesCS5D01G126700.1 | Wheat | mitochondrion | 55.53 | 62.05 |
| TraesCS5B01G121400.3 | Wheat | mitochondrion | 55.53 | 62.05 |
| TraesCS5A01G120000.3 | Wheat | mitochondrion | 55.53 | 62.05 |
| AT5G09300.1 | Thale cress | plastid | 55.53 | 61.65 |
| HORVU5Hr1G034820.3 | Barley | mitochondrion | 54.77 | 61.19 |
| PGSC0003DMT400063962 | Potato | mitochondrion, plastid | 54.96 | 61.15 |
| Os12t0183100-01 | Rice | mitochondrion | 56.68 | 61.11 |
| PGSC0003DMT400033905 | Potato | mitochondrion | 52.48 | 60.31 |
| Solyc06g059840.2.1 | Tomato | mitochondrion | 52.29 | 60.09 |
| Zm00001d023694_P001 | Maize | mitochondrion | 55.92 | 60.04 |
| Solyc04g063350.2.1 | Tomato | mitochondrion | 54.01 | 59.96 |
| AT5G34780.1 | Thale cress | cytosol, mitochondrion | 41.41 | 59.45 |
| KXG23145 | Sorghum | mitochondrion | 55.34 | 57.31 |
| PGSC0003DMT400012840 | Potato | cytosol, mitochondrion, plasma membrane | 29.58 | 56.78 |
| Solyc12g055890.1.1 | Tomato | mitochondrion | 31.87 | 56.23 |
| Solyc12g055880.1.1 | Tomato | cytosol | 13.74 | 53.33 |
| AT1G59900.1 | Thale cress | mitochondrion | 19.27 | 25.96 |
| AT1G24180.1 | Thale cress | mitochondrion | 18.51 | 24.68 |
| AT1G01090.1 | Thale cress | plastid | 17.56 | 21.5 |
Protein Annotations
| Gene3D:3.40.50.970 | MapMan:4.2.7.2.1.1 | EntrezGene:838739 | UniProt:A0A1P8AMS1 | ProteinID:ANM57954.1 | ArrayExpress:AT1G21400 |
| EnsemblPlantsGene:AT1G21400 | RefSeq:AT1G21400 | TAIR:AT1G21400 | RefSeq:AT1G21400-TAIR-G | EnsemblPlants:AT1G21400.5 | Unigene:At.21619 |
| ncoils:Coil | InterPro:DH_E1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016624 | GO:GO:0055114 | RefSeq:NP_001320428.1 |
| PFAM:PF00676 | PANTHER:PTHR43380 | PANTHER:PTHR43380:SF2 | SUPFAM:SSF52518 | InterPro:THDP-binding | TMHMM:TMhelix |
| UniParc:UPI000848B130 | SEG:seg | : | : | : | : |
Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
Coordinates
chr1:+:7493213..7496741
Molecular Weight (calculated)
59380.4 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.362
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCQVRQGNT CTCRPSNPLP LNIVKNDNFS LLLLYSSPFS SLLLFFVHFL TDMAIWFARS KTLVSSLRHN LNLSTILIKR DYSHRPIFYT TSQLSSTAYL
101: SPFGSLRHES TAVETQADHL VQQIDEVDAQ ELDFPGGKVG YTSEMKFIPE SSSRRIPCYR VLDEDGRIIP DSDFIPVSEK LAVRMYEQMA TLQVMDHIFY
201: EAQRQGRISF YLTSVGEEAI NIASAAALSP DDVVLPQYRE PGVLLWRGFT LEEFANQCFG NKADYGKGRQ MPIHYGSNRL NYFTISSPIA TQLPQAAGVG
301: YSLKMDKKNA CTVTFIGDGG TSEGDFHAGL NFAAVMEAPV VFICRNNGWA ISTHISEQFR SDGIVVKGQA YGIRSIRVDG NDALAVYSAV RSAREMAVTE
401: QRPVLIEMMT YRVGHHSTSD DSTKYRAADE IQYWKMSRNP VNRFRKWVED NGWWSEEDES KLRSNARKQL LQAIQAAEKW EKQPLTELFN DVYDVKPKNL
501: EEQELGLKEL VKKQPQDYPP GFHV
101: SPFGSLRHES TAVETQADHL VQQIDEVDAQ ELDFPGGKVG YTSEMKFIPE SSSRRIPCYR VLDEDGRIIP DSDFIPVSEK LAVRMYEQMA TLQVMDHIFY
201: EAQRQGRISF YLTSVGEEAI NIASAAALSP DDVVLPQYRE PGVLLWRGFT LEEFANQCFG NKADYGKGRQ MPIHYGSNRL NYFTISSPIA TQLPQAAGVG
301: YSLKMDKKNA CTVTFIGDGG TSEGDFHAGL NFAAVMEAPV VFICRNNGWA ISTHISEQFR SDGIVVKGQA YGIRSIRVDG NDALAVYSAV RSAREMAVTE
401: QRPVLIEMMT YRVGHHSTSD DSTKYRAADE IQYWKMSRNP VNRFRKWVED NGWWSEEDES KLRSNARKQL LQAIQAAEKW EKQPLTELFN DVYDVKPKNL
501: EEQELGLKEL VKKQPQDYPP GFHV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.