CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64579	Soybean	endoplasmic reticulum	91.99	93.72
Solyc06g059850.1.1	Tomato	cytosol	55.03	70.53
Bra016423.1-P	Field mustard	mitochondrion	63.66	65.82
Bra017912.1-P	Field mustard	mitochondrion	63.45	65.47
CDY50237	Canola	mitochondrion	63.45	65.47
CDX96593	Canola	mitochondrion	63.24	65.39
CDY65512	Canola	mitochondrion	63.24	65.25
GSMUA_Achr3P18980_001	Banana	mitochondrion	61.4	65.0
VIT_18s0001g14980.t01	Wine grape	plastid	62.83	64.97
CDY65109	Canola	mitochondrion	62.63	64.48
TraesCS4B01G071500.1	Wheat	mitochondrion	59.34	62.02
TraesCS5B01G121400.3	Wheat	mitochondrion	59.55	61.83
TraesCS5D01G126700.1	Wheat	mitochondrion	59.34	61.62
Os12t0183100-01	Rice	mitochondrion	61.19	61.32
TraesCS5A01G120000.3	Wheat	mitochondrion	58.93	61.19
PGSC0003DMT400063962	Potato	mitochondrion, plastid	58.93	60.93
HORVU5Hr1G034820.3	Barley	mitochondrion	58.11	60.34
KRH64030	Soybean	mitochondrion, plastid	58.73	60.34
Zm00001d023694_P001	Maize	mitochondrion	60.37	60.25
PGSC0003DMT400033905	Potato	mitochondrion	56.26	60.09
Solyc12g055880.1.1	Tomato	cytosol	16.63	60.0
Solyc04g063350.2.1	Tomato	mitochondrion	58.11	59.96
Solyc06g059840.2.1	Tomato	mitochondrion	55.85	59.65
KXG23145	Sorghum	mitochondrion	60.99	58.7
AT1G21400.5	Thale cress	plastid	62.42	58.02
KRG99480	Soybean	cytosol	24.02	57.64
KRH53908	Soybean	cytosol	14.17	57.5
Solyc12g055890.1.1	Tomato	mitochondrion	34.5	56.57
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	30.6	54.58
AT5G34780.1	Thale cress	cytosol, mitochondrion	33.68	44.93
KRG99219	Soybean	mitochondrion	18.07	25.58
KRH45768	Soybean	mitochondrion	20.53	25.38
KRH69435	Soybean	mitochondrion	20.33	25.0
KRH74712	Soybean	mitochondrion	18.28	24.32
KRH47800	Soybean	plastid	20.33	22.92
KRH68960	Soybean	plastid	19.3	22.49
KRG97240	Soybean	plastid	19.51	22.25
KRH06359	Soybean	nucleus	19.71	22.22
KRG95283	Soybean	cytosol, mitochondrion, plastid	6.16	18.29

Protein Annotations

EntrezGene:100796766	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.1	ProteinID:ACJ61481.1	EMBL:ACUP02003459	InterPro:DH_E1
EnsemblPlantsGene:GLYMA_06G120300	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016624
GO:GO:0055114	UniProt:I1KAH2	EnsemblPlants:KRH53343	ProteinID:KRH53343	ProteinID:KRH53343.1	PFAM:PF00676
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	SUPFAM:SSF52518	InterPro:THDP-binding	UniParc:UPI00023398B5	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:9778588..9785737

Molecular Weight (calculated)

55345.5 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.479

Length

487 amino acids

Sequence
(BLAST)

001: MASWLLGRSS RILIHQHHHL HKKYLPFLLG PFLNHNNSSC SSFPSTEPFR CRDAFPGKNS SPTLFRFSRH ESTKAEAQLE LEQDVATEDE PNQVIDFPGG
101: KVGFTSEMRF ISESPEKRVP CYRVLDDNGE IVKYSNYVQV SKEMGVKMYS DMVTLQTMDN IFYEVQRQGR ISFYLTQMGE EAVNIASAAA LAPDDIILPQ
201: YREPGVLLWR GFTLQQFVHQ CFGNTHDFGK GRQMPIHYGS NQHNYFTVSS PIATQLPQAV GAAYSLKMDG KSACAVTFCG DGATSEGDFH AAMNFAAVME
301: APVVFICRNN GWAISTPVED QFRSDGIVVK GKAYGIWSIR VDGNDALAVY SAVHTAREIA IKEKRPVLIE ALTYRVGHHS TSDDSTKYRG TDEIEYWKMA
401: RNPVNRFKRW VERNGWWSDK DELELRSSVR KQLMHAIQVA EKAQKPPLQD LFNDVYDQIP SNLQEQERLI RKTIEKHPKD YPSDVPL

Best Arabidopsis Sequence Match ( AT5G09300.1 )
(BLAST)

001: MALHLRSSFS SKSTLLNILR HNLGFGSRSH VTRHIRQILP HDPPLRGSQN PISRLCNTMA EPETLSSFVQ HEYANNHQVM DFPGGKVAFT PEIQFISESD
101: KERVPCYRVL DDNGQLITNS QFVQVSEEVA VKIYSDMVTL QIMDNIFYEA QRQGRLSFYA TAIGEEAINI ASAAALTPQD VIFPQYREPG VLLWRGFTLQ
201: EFANQCFGNK SDYGKGRQMP VHYGSNKLNY FTVSATIATQ LPNAVGAAYS LKMDKKDACA VTYFGDGGTS EGDFHAALNI AAVMEAPVLF ICRNNGWAIS
301: TPTSDQFRSD GVVVKGRAYG IRSIRVDGND ALAMYSAVHT AREMAIREQR PILIEALTYR VGHHSTSDDS TRYRSAGEIE WWNKARNPLS RFRTWIESNG
401: WWSDKTESDL RSRIKKEMLE ALRVAEKTEK PNLQNMFSDV YDVPPSNLRE QELLVRQTIN SHPQDYPSDV PL

Arabidopsis Description

2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JL2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.