CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53908	Soybean	cytosol	39.9	67.5
KRH64030	Soybean	mitochondrion, plastid	78.33	33.54
VIT_04s0044g01490.t01	Wine grape	mitochondrion	66.01	27.86
Bra006017.1-P	Field mustard	plastid	63.55	27.56
CDX81122	Canola	plastid	63.05	27.41
AT5G09300.1	Thale cress	plastid	63.55	27.33
CDX78354	Canola	plastid	63.55	27.33
PGSC0003DMT400060275	Potato	mitochondrion	62.07	26.98
TraesCS4B01G071500.1	Wheat	mitochondrion	61.08	26.61
Os12t0183100-01	Rice	mitochondrion	63.55	26.54
TraesCS5D01G126700.1	Wheat	mitochondrion	61.08	26.44
TraesCS5B01G121400.3	Wheat	mitochondrion	61.08	26.44
Solyc05g056480.2.1	Tomato	plastid	60.59	26.34
Zm00001d023694_P001	Maize	mitochondrion	63.05	26.23
HORVU5Hr1G034820.3	Barley	mitochondrion	60.59	26.23
TraesCS5A01G120000.3	Wheat	mitochondrion	60.59	26.23
GSMUA_Achr3P18980_001	Banana	mitochondrion	58.62	25.87
KXG23145	Sorghum	mitochondrion	63.05	25.3
KRH64579	Soybean	endoplasmic reticulum	57.64	24.48
KRH53343	Soybean	mitochondrion	57.64	24.02
KRG99219	Soybean	mitochondrion	23.65	13.95
KRH68960	Soybean	plastid	26.11	12.68
KRG97240	Soybean	plastid	26.11	12.41
KRH45768	Soybean	mitochondrion	23.65	12.18
KRH06359	Soybean	nucleus	25.62	12.04
KRH69435	Soybean	mitochondrion	22.66	11.62
KRH47800	Soybean	plastid	24.63	11.57
KRH74712	Soybean	mitochondrion	20.69	11.48
KRG95283	Soybean	cytosol, mitochondrion, plastid	5.42	6.71

Protein Annotations

EMBL:ACUP02011074	EnsemblPlants:KRG99480	EnsemblPlantsGene:GLYMA_18G148300	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	ProteinID:KRG99480	ProteinID:KRG99480.1	SUPFAM:SSF52518
UniParc:UPI000296263E	UniProt:K7MSE2	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:25552543..25553882

Molecular Weight (calculated)

23357.8 Da

IEP (calculated)

9.337

GRAVY (calculated)

-0.458

Length

203 amino acids

Sequence
(BLAST)

001: MWQWGVARKC SDANKYDNVK GRQMLTHYRP KKHNYFTVAS TIATQISHVV GATYSLKMDK KDACVVTYFG DGGSRTFPCC LKFSAVLEAP VIFICWNNGW
101: AISTPISDQF PRKAYGVRSI RDGNDALDIY SAIQAAHQMA ITEERPILIE ALTYRVGHHT ASDDSTKYHP VNEIKWWRLT RDPMARFRKW IEKNGWWNDM
201: AES

Best Arabidopsis Sequence Match ( AT1G21400.2 )
(BLAST)

001: MKFIPESSSR RIPCYRVLDE DGRIIPDSDF IPVSEKLAVR MYEQMATLQV MDHIFYEAQR QGRISFYLTS VGEEAINIAS AAALSPDDVV LPQYREPGVL
101: LWRGFTLEEF ANQCFGNKAD YGKGRQMPIH YGSNRLNYFT ISSPIATQLP QAAGVGYSLK MDKKNACTVT FIGDGGTSEG DFHAGLNFAA VMEAPVVFIC
201: RNNGWAISTH ISEQFRSDGI VVKGQAYGIR SIRVDGNDAL AVYSAVRSAR EMAVTEQRPV LIEMMTYRVG HHSTSDDSTK YRAADEIQYW KMSRNPVNRF
301: RKWVEDNGWW SEEDESKLRS NARKQLLQAI QAAEKWEKQP LTELFNDVYD VKPKNLEEQE LGLKELVKKQ PQDYPPGFHV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.