CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14338
KRH16935
KRH73802

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	KRH14338	AT5G50850.1	21798944
AT1G01090.1	KRH16935	AT5G50850.1	21798944
AT1G01090.1	KRH73802	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97240	Soybean	plastid	96.17	94.15
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.97	93.2
CDY37427	Canola	cytosol, mitochondrion, plastid	32.54	88.31
CDY37428	Canola	cytosol	30.38	86.39
KRH06359	Soybean	nucleus	82.54	79.86
KRH47800	Soybean	plastid	82.06	79.4
VIT_15s0048g02580.t01	Wine grape	plastid	81.82	78.98
PGSC0003DMT400035288	Potato	plastid	81.34	77.8
CDY37473	Canola	plastid	78.71	77.78
Solyc12g009410.1.1	Tomato	plastid	81.58	77.5
CDY32445	Canola	plastid	78.71	77.41
Bra032619.1-P	Field mustard	plastid	78.71	77.41
AT1G01090.1	Thale cress	plastid	79.19	77.34
PGSC0003DMT400007571	Potato	plastid	81.34	77.27
Solyc12g009400.1.1	Tomato	plastid	81.1	77.05
CDX90009	Canola	plastid	78.47	77.0
Bra033286.1-P	Field mustard	plastid	78.47	77.0
CDY15202	Canola	plastid	78.47	76.46
TraesCS2D01G010700.1	Wheat	golgi	75.12	74.76
Zm00001d004473_P001	Maize	plastid	76.08	74.3
TraesCS2B01G012500.1	Wheat	plastid	74.64	74.11
TraesCS2A01G010100.1	Wheat	plastid	74.64	74.11
EES10385	Sorghum	plastid	76.32	74.01
Os04t0119400-01	Rice	plastid	75.12	73.88
GSMUA_Achr11P...	Banana	plastid	75.12	73.02
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	49.04	71.93
HORVU2Hr1G001600.1	Barley	plastid	74.16	67.83
KRH69435	Soybean	mitochondrion	34.45	36.36
KRH74712	Soybean	mitochondrion	31.82	36.34
KRH45768	Soybean	mitochondrion	33.97	36.04
KRG99219	Soybean	mitochondrion	29.43	35.76
GSMUA_Achr5P18750_001	Banana	plastid	69.86	32.37
KRG95283	Soybean	cytosol, mitochondrion, plastid	12.44	31.71
KRG99480	Soybean	cytosol	12.68	26.11
KRH53908	Soybean	cytosol	6.7	23.33
KRH64579	Soybean	endoplasmic reticulum	22.49	19.67
KRH53343	Soybean	mitochondrion	22.49	19.3
KRH64030	Soybean	mitochondrion, plastid	20.81	18.35

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100778279	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1
EMBL:ACUP02002128	ncoils:Coil	InterPro:DH_E1	EnsemblPlantsGene:GLYMA_03G261000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231
GO:GO:0055114	UniProt:K7KH56	EnsemblPlants:KRH68960	ProteinID:KRH68960	ProteinID:KRH68960.1	PFAM:PF00676
PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182
UniParc:UPI00023379C3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45465093..45469201

Molecular Weight (calculated)

46421.7 Da

IEP (calculated)

7.837

GRAVY (calculated)

-0.324

Length

418 amino acids

Sequence
(BLAST)

001: MSLSVPKLVQ PLPLQHHRSN STLFLGSTHK FRFISPIKLN APRSNSTVVS VSNLVKNNKP KSTTNLLITK GEGLQLYEDM VLGRSFEDMC AQMYYRGKMF
101: GFVHLYNGQE AVSTGFINFL KKEDCVVSTY RDHVHALSKG VPARAVMSEL FGKATGCSRG QGGSMHMFSK EHNLIGGFAF IAEGIPVATG AAFSSKYRRE
201: VLKEADCDHV TLAFFGDGTC NNGQFYECLN MAALWKLPIV FVVENNLWAI GMSHLRATSD PQIWKKGPAF GMPGVHVDGM DVLKVREVAK EAIERARRGE
301: GPTLVECETY RFRGHSLADP DELRDPAEKA HYAGRDPISA LKKYMIENKL ASEQELKTIE KKIEEIVEDA VEFADESPHP PRSQLLENVF ADPKGFGIGP
401: DGKYRCEDPK FTQGTAHV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.