CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95283
KRG99219
KRH45768
KRH69435
KRH74712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	KRG95283	AT1G59900.1	21798944
AT5G50850.1	KRG99219	AT1G59900.1	21798944
AT5G50850.1	KRH45768	AT1G59900.1	21798944
AT5G50850.1	KRH69435	AT1G59900.1	21798944
AT5G50850.1	KRH74712	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14338	Soybean	mitochondrion	98.33	98.33
KRH16935	Soybean	mitochondrion	95.56	95.56
VIT_01s0146g00310.t01	Wine grape	mitochondrion	88.33	86.65
Os08t0536000-01	Rice	mitochondrion	87.78	84.49
PGSC0003DMT400011072	Potato	mitochondrion	86.39	84.28
Os09t0509200-01	Rice	mitochondrion	87.5	83.78
Solyc03g097680.2.1	Tomato	plastid	85.83	83.74
KXG25507	Sorghum	mitochondrion	86.94	83.69
TraesCS7B01G161100.1	Wheat	mitochondrion	85.56	83.47
EER97019	Sorghum	mitochondrion	86.94	83.47
Zm00001d006107_P001	Maize	mitochondrion	86.67	83.42
Solyc06g072580.2.1	Tomato	nucleus	85.0	83.38
TraesCS7D01G263900.2	Wheat	mitochondrion	84.72	83.33
HORVU7Hr1G055090.3	Barley	mitochondrion	85.56	83.24
TraesCS7A01G263300.1	Wheat	plastid	85.28	83.2
TraesCS5B01G290600.1	Wheat	mitochondrion	86.39	82.71
TraesCS5A01G291500.1	Wheat	golgi	86.11	82.45
TraesCS5D01G299000.1	Wheat	mitochondrion	85.83	82.18
AT5G50850.1	Thale cress	mitochondrion	82.22	81.54
CDX84881	Canola	mitochondrion	83.06	81.47
CDY16348	Canola	mitochondrion	82.78	81.42
CDX91560	Canola	mitochondrion	82.78	81.42
CDX71636	Canola	mitochondrion	82.22	81.32
CDY05827	Canola	mitochondrion	81.94	81.04
CDY45814	Canola	mitochondrion	82.22	80.65
Bra022529.1-P	Field mustard	mitochondrion	81.67	80.33
Bra026451.1-P	Field mustard	mitochondrion	76.94	80.29
Bra022757.1-P	Field mustard	mitochondrion	81.67	80.11
Zm00001d031659_P001	Maize	mitochondrion	87.22	79.09
PGSC0003DMT400069263	Potato	mitochondrion	83.33	78.12
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	46.39	76.96
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	87.22	75.85
Zm00001d021070_P002	Maize	mitochondrion	85.28	74.7
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	85.28	71.23
Bra035715.1-P	Field mustard	mitochondrion	79.72	63.36
KRH58644	Soybean	nucleus	40.56	36.05
KRH05520	Soybean	plastid	40.0	35.73
KRH15497	Soybean	plastid	40.0	35.56
KRH42550	Soybean	plastid	40.0	35.47
KRH65916	Soybean	mitochondrion	29.72	29.89
KRH75712	Soybean	mitochondrion	29.44	29.78

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EMBL:ACUP02001288	EnsemblPlantsGene:GLYMA_02G294500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975
GO:GO:0006086	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	UniProt:I1JJD2
InterPro:IPR009014	EnsemblPlants:KRH73802	ProteinID:KRH73802	ProteinID:KRH73802.1	ProteinID:KRH73803.1	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000233746B

Description

hypothetical protein

Coordinates

chr2:-:47272683..47277831

Molecular Weight (calculated)

38723.5 Da

IEP (calculated)

5.765

GRAVY (calculated)

0.007

Length

360 amino acids

Sequence
(BLAST)

001: MLGVIRHKSI RPAFSAIRHL SSAAKEITVR EALNSALDEE MSADPKVFLM GEEVGEYQGA YKISKGLLDK YGPERVLDTP ITEAGFTGIG VGAAYYGLRP
101: VVEFMTFNFS MQAIDHIINS AAKSNYMSAG QISVPIVFRG PNGAAAGVGA QHSQCYASWY GSCPGLKVLS PYSSEDARGL LKAAIRDPDP VVFLENELLY
201: GESFPVSAEV LDSSFCLPIG KAKIEREGKD VTITAYSKMV GFALKAAETL AKEGISAEVI NLRSIRPLDR STINTSVRKT NRLVTVEEGF PQHGVGAEIC
301: TSVIEESFGY LDAPVERIAG ADVPMPYAAN LERMAVPQVE DIVRAAKRAC YRSVPLAASA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.