CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88157
EES05555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	EER88157	AT1G59900.1	21798944
AT5G50850.1	EES05555	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031659_P001	Maize	mitochondrion	98.93	93.2
Os08t0536000-01	Rice	mitochondrion	91.44	91.44
EER97019	Sorghum	mitochondrion	91.44	91.2
HORVU7Hr1G055090.3	Barley	mitochondrion	88.24	89.19
TraesCS7B01G161100.1	Wheat	mitochondrion	87.97	89.16
TraesCS7A01G263300.1	Wheat	plastid	87.7	88.89
TraesCS7D01G263900.2	Wheat	mitochondrion	86.63	88.52
KRH16935	Soybean	mitochondrion	84.22	87.5
KRH73802	Soybean	mitochondrion	83.69	86.94
KRH14338	Soybean	mitochondrion	82.89	86.11
VIT_01s0146g00310.t01	Wine grape	mitochondrion	81.82	83.38
PGSC0003DMT400011072	Potato	mitochondrion	81.55	82.66
CDX71636	Canola	mitochondrion	80.21	82.42
AT5G50850.1	Thale cress	mitochondrion	79.95	82.37
Solyc03g097680.2.1	Tomato	plastid	81.02	82.11
Solyc06g072580.2.1	Tomato	nucleus	80.48	82.02
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.34	81.84
CDY16348	Canola	mitochondrion	79.95	81.69
CDX91560	Canola	mitochondrion	79.95	81.69
CDY05827	Canola	mitochondrion	79.41	81.59
CDY45814	Canola	mitochondrion	79.95	81.47
CDX84881	Canola	mitochondrion	79.95	81.47
Bra026451.1-P	Field mustard	mitochondrion	75.13	81.45
Bra022757.1-P	Field mustard	mitochondrion	79.14	80.65
Bra022529.1-P	Field mustard	mitochondrion	78.88	80.6
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	45.19	77.88
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.83	77.54
PGSC0003DMT400069263	Potato	mitochondrion	79.14	77.08
Bra035715.1-P	Field mustard	mitochondrion	77.81	64.24
EER93752	Sorghum	plastid	37.97	36.69
EES16391	Sorghum	plastid	38.77	36.34
EER98039	Sorghum	mitochondrion	31.28	31.71

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
UniProt:A0A1B6PIQ7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EnsemblPlants:KXG25507
ProteinID:KXG25507	ProteinID:KXG25507.1	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	EnsemblPlantsGene:SORBI_3007G190100	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001C80D60	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:62288987..62294732

Molecular Weight (calculated)

39872.0 Da

IEP (calculated)

5.478

GRAVY (calculated)

0.091

Length

374 amino acids

Sequence
(BLAST)

001: MLGVARRRLG SGCVLSQLAQ ALRPAAAAPA RTYSAAAKEI TVREALNTAL DEEMSADPSV FLMGEEVGEY QGAYKISKGL LDKYGPDRVL DTPITEAGFT
101: GIGVGAAYHG LRPIVEFMTF NFSMQAIDHI INSAAKSNYM SAGQISVPIV FRGPNGAAAG VGAQHSQCYA AWYAHVPGLK VLAPYSAEDA RGLLKAAIRD
201: PDPVVFLENE LLYGESFPVS AEVLDSSFCL PIGKAKIERQ GKDVTITAFS KMVGYALQAA DILAKEGISA EVINLRSIRP LDRAAINASV RKTNRLVTVE
301: EGFPQHGIGA EICMSVVEDS FEYLDAPVER IAGADVPMPY AANLERMAVP QVDDIVRAAK RACYRAAVPM AATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.