Factsheet for VIT_17s0000g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00990.t01
VIT_09s0018g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	VIT_01s0026g00990.t01	AT1G59900.1	21798944
AT5G50850.1	VIT_09s0018g01940.t01	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97019	Sorghum	mitochondrion	84.36	80.53
Zm00001d006107_P001	Maize	mitochondrion	83.8	80.21
Bra026451.1-P	Field mustard	mitochondrion	76.82	79.71
TraesCS7A01G263300.1	Wheat	plastid	82.12	79.67
AT5G50850.1	Thale cress	mitochondrion	80.73	79.61
TraesCS7B01G161100.1	Wheat	mitochondrion	81.84	79.4
HORVU7Hr1G055090.3	Barley	mitochondrion	81.84	79.19
CDX71636	Canola	mitochondrion	80.45	79.12
CDX84881	Canola	mitochondrion	81.01	79.02
Solyc06g072580.2.1	Tomato	nucleus	81.01	79.02
TraesCS7D01G263900.2	Wheat	mitochondrion	80.73	78.96
PGSC0003DMT400011072	Potato	mitochondrion	81.28	78.86
Solyc03g097680.2.1	Tomato	plastid	81.28	78.86
CDY45814	Canola	mitochondrion	80.73	78.75
VIT_01s0146g00310.t01	Wine grape	mitochondrion	80.73	78.75
CDY05827	Canola	mitochondrion	79.89	78.57
CDY16348	Canola	mitochondrion	80.17	78.42
KXG25507	Sorghum	mitochondrion	81.84	78.34
Os09t0509200-01	Rice	mitochondrion	82.12	78.19
CDX91560	Canola	mitochondrion	79.89	78.14
Bra022757.1-P	Field mustard	mitochondrion	79.89	77.93
TraesCS5A01G291500.1	Wheat	golgi	81.84	77.93
TraesCS5B01G290600.1	Wheat	mitochondrion	81.84	77.93
Os08t0536000-01	Rice	mitochondrion	81.28	77.81
TraesCS5D01G299000.1	Wheat	mitochondrion	81.56	77.66
Bra022529.1-P	Field mustard	mitochondrion	79.05	77.32
PGSC0003DMT400069263	Potato	mitochondrion	80.17	74.74
Zm00001d031659_P001	Maize	mitochondrion	81.56	73.55
Zm00001d021070_P002	Maize	mitochondrion	81.28	70.8
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	81.84	67.98
Bra035715.1-P	Field mustard	mitochondrion	78.21	61.81
VIT_04s0008g02300.t01	Wine grape	mitochondrion	20.11	54.55
VIT_10s0003g03770.t01	Wine grape	plastid	38.27	35.04
VIT_04s0043g00720.t01	Wine grape	plastid	37.43	33.09
VIT_06s0004g00190.t01	Wine grape	mitochondrion	32.12	32.12

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100247469	wikigene:100247469	MapMan:2.2.1.1.2
Gene3D:3.40.50.920	Gene3D:3.40.50.970	ProteinID:CCB43350	ProteinID:CCB43350.1	UniProt:F6GT05	EMBL:FN594950
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EntrezGene:LOC100247469	wikigene:LOC100247469
InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0002109FFD	ArrayExpress:VIT_17s0000g00690	EnsemblPlantsGene:VIT_17s0000g00690	EnsemblPlants:VIT_17s0000g00690.t01	unigene:Vvi.9682	RefSeq:XP_002280637
RefSeq:XP_002280637.1	:	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:F6GT05]

Coordinates

chr17:-:443966..451657

Molecular Weight (calculated)

38445.1 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.011

Length

358 amino acids

Sequence
(BLAST)

001: MATALNRTRP VVYASRSYAS GPKQMTVREA LNTAIDEEMS ADPKVFLMGE EVGEYQGAYK ISKGLLDKYG PGRVIDTPIT EAGFAGIGVG AAYHGLKPII
101: EFMTFNFSLQ AIDHIINSAA KSNYMSAGQI SVPIVFRGPN GAAAGVGAQH SQCFAAWYGA CPGLKVLVPY SSEDARGLLK AAIRDPDPVV FLENELLYGQ
201: SFPVSEEALD SSFSLPIGKA KIEREGKDVT IVTYARMVDY SLQAAEILAK EGISAEVINL RSIRPLDRSA INASVRKTSR LVTVEEGFPQ HGVGAEICMS
301: VIEESFDSLD APVERIAGAD IPMPYAANLE RMALPQIDDI IRAAKRTCYR SAPKAAAA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.