Factsheet for Zm00001d021070_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014514_P001
Zm00001d014833_P001
Zm00001d017985_P001
Zm00001d044748_P002
Zm00001d052289_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Zm00001d014514_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d014833_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d017985_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d044748_P002	AT1G59900.1	21798944
AT5G50850.1	Zm00001d052289_P001	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006107_P001	Maize	mitochondrion	83.21	91.44
EER97019	Sorghum	mitochondrion	82.97	90.93
TraesCS5B01G290600.1	Wheat	mitochondrion	80.54	88.03
TraesCS5A01G291500.1	Wheat	golgi	80.54	88.03
TraesCS5D01G299000.1	Wheat	mitochondrion	80.29	87.77
Os09t0509200-01	Rice	mitochondrion	78.59	85.9
KRH16935	Soybean	mitochondrion	74.94	85.56
KRH73802	Soybean	mitochondrion	74.7	85.28
KRH14338	Soybean	mitochondrion	73.97	84.44
VIT_01s0146g00310.t01	Wine grape	mitochondrion	75.18	84.2
PGSC0003DMT400011072	Potato	mitochondrion	74.21	82.66
Zm00001d031659_P001	Maize	mitochondrion	79.81	82.62
Solyc03g097680.2.1	Tomato	plastid	73.48	81.84
VIT_17s0000g00690.t01	Wine grape	mitochondrion	70.8	81.28
Solyc06g072580.2.1	Tomato	nucleus	72.02	80.65
CDX71636	Canola	mitochondrion	71.29	80.49
AT5G50850.1	Thale cress	mitochondrion	70.56	79.89
CDY16348	Canola	mitochondrion	71.05	79.78
CDX91560	Canola	mitochondrion	71.05	79.78
CDY05827	Canola	mitochondrion	70.56	79.67
CDX84881	Canola	mitochondrion	71.05	79.56
Bra026451.1-P	Field mustard	mitochondrion	66.67	79.42
CDY45814	Canola	mitochondrion	70.8	79.29
Bra022757.1-P	Field mustard	mitochondrion	70.32	78.75
Bra022529.1-P	Field mustard	mitochondrion	70.07	78.69
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	40.88	77.42
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	77.86	77.29
PGSC0003DMT400069263	Potato	mitochondrion	71.53	76.56
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	77.62	74.01
Bra035715.1-P	Field mustard	mitochondrion	68.61	62.25
Zm00001d000227_P001	Maize	cytosol	32.85	42.32
Zm00001d033225_P002	Maize	plastid	34.55	37.08
Zm00001d007892_P001	Maize	mitochondrion	27.01	30.58

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EntrezGene:542607	UniProt:A0A1D6I872	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975
GO:GO:0006086	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0055114	InterPro:IPR009014	ProteinID:ONM56245.1	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
TMHMM:TMhelix	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000842C9E7	EnsemblPlantsGene:Zm00001d021070
EnsemblPlants:Zm00001d021070_P002	EnsemblPlants:Zm00001d021070_T002	:	:	:	:

Description

pyruvate dehydrogenase4 pyruvate dehydrogenase4

Coordinates

chr7:+:142133051..142138801

Molecular Weight (calculated)

44358.6 Da

IEP (calculated)

5.770

GRAVY (calculated)

0.133

Length

411 amino acids

Sequence
(BLAST)

001: MLGAARRQLG SGPMLGQVLR RLRPAAAAEV ARGYSAAAKE VRGRFTETYP PASVLFPCCS FYVFMWQVIY IIVLHVQMTV RDALNSALDE EMSADPSVFL
101: MGEEVGEYQG AYKISKGLLD KYGPDRVLDT PITEAGFTGI GVGAAYQGLR PVIEFMTFNF SMQAIDHIIN SAAKSNYMSA GQISVPIVFR GPNGAAAGVG
201: AQHSQCYAVW FAHVPGLKVL TPYSSEDARG LLKAAIRDPD PVIFLENELL YGESFPVSAE VLDSSFCLPI GKAKIERGGK DVTITAFSKM VGYALQAAEI
301: LSKEGISAEV INLRSIRPLD RAAINASVRK TNRLVTVEEG FPQHGIGAEI CMSVVEESFE YLDAPVERIA GADVPMPYAA NLERMAVPQV DDIVRAAKRA
401: CYRAVPMAAA A

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.