Factsheet for Zm00001d052289_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017985_P001	Maize	mitochondrion	96.67	96.67
Zm00001d014833_P001	Maize	cytosol, golgi	21.79	94.44
Os02t0739600-01	Rice	mitochondrion	92.56	92.56
TraesCS6A01G311800.1	Wheat	golgi	85.13	89.49
TraesCS6D01G291100.1	Wheat	mitochondrion	87.95	88.4
TraesCS6B01G342000.1	Wheat	mitochondrion	87.69	88.14
HORVU6Hr1G076810.1	Barley	plastid	88.21	85.15
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	70.0	84.26
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	61.28	82.13
CDY31596	Canola	mitochondrion	13.85	80.6
Zm00001d044748_P002	Maize	mitochondrion	79.74	79.34
CDY70124	Canola	cytosol	29.49	79.31
AT1G59900.1	Thale cress	mitochondrion	78.21	78.41
Solyc05g006520.2.1	Tomato	plastid	77.95	77.75
PGSC0003DMT400058223	Potato	mitochondrion	77.95	77.75
Bra035416.1-P	Field mustard	mitochondrion	77.44	77.64
CDY24500	Canola	mitochondrion	77.44	77.64
CDY33613	Canola	mitochondrion	77.18	77.38
KRH69435	Soybean	mitochondrion	78.46	77.27
KRH45768	Soybean	mitochondrion	77.95	77.16
AT1G24180.1	Thale cress	mitochondrion	76.92	76.34
CDY16236	Canola	mitochondrion	75.64	76.23
KRG99219	Soybean	mitochondrion	67.18	76.16
CDY38784	Canola	mitochondrion	76.41	76.02
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	26.67	75.91
Bra024643.1-P	Field mustard	mitochondrion	75.13	75.71
CDY11622	Canola	mitochondrion	75.9	75.51
CDY28458	Canola	mitochondrion	76.41	75.44
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	76.92	75.38
KRH74712	Soybean	mitochondrion	70.51	75.14
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	76.67	75.13
Bra012418.1-P	Field mustard	mitochondrion	76.15	75.0
PGSC0003DMT400004851	Potato	mitochondrion	74.62	75.0
CDY40292	Canola	mitochondrion	75.9	74.94
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	75.13	74.94
Bra016238.1-P	Field mustard	mitochondrion	75.38	73.5
CDY55062	Canola	cytosol	32.56	67.55
Bra017890.1-P	Field mustard	cytosol	15.13	65.56
KRG95283	Soybean	cytosol, mitochondrion, plastid	27.18	64.63
CDY14675	Canola	cytosol	70.0	62.05
CDY55064	Canola	plasma membrane	50.26	59.76
Zm00001d004473_P001	Maize	plastid	36.41	33.18
Zm00001d023694_P001	Maize	mitochondrion	27.69	22.13
Os02t0739700-01	Rice	plastid	2.05	1.81

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	EntrezGene:732791
ProteinID:AQK56674.1	UniProt:B4FGJ4	EMBL:BT036232	ncoils:Coil	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624
GO:GO:0043231	GO:GO:0055114	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI00017B695B	EnsemblPlantsGene:Zm00001d052289	EnsemblPlants:Zm00001d052289_P001
EnsemblPlants:Zm00001d052289_T001	SEG:seg	:	:	:	:

Description

pyruvate dehydrogenase1 pyruvate dehydrogenase1

Coordinates

chr4:+:186090480..186095214

Molecular Weight (calculated)

42753.1 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.290

Length

390 amino acids

Sequence
(BLAST)

001: MAAAALIRRL PAARAQAPAF MAARPISDST AAFTIETSVP FTSHLVDPPS RDVTTTPAEL VTFFRDMSLM RRMEIAADSL YKAKLIRGFC HLYDGQEAVA
101: VGMEAAITRS DSIITAYRDH CTYLARGGDL VSAFSELMGR EAGCSRGKGG SMHFYKKDAN FYGGHGIVGA QVPLGCGLAF AQKYKKEDTA TFALYGDGAA
201: NQGQLFEALN ISALWKLPAI LVCENNHYGM GTAEWRAAKS PAYYKRGDYV PGLKVDGMDV LAVKQACKFA KDHAVANGPI VLEMDTYRYH GHSMSDPGST
301: YRTRDEISGV RQERDPIERV RKLLLTHDLA NAAELKNMEK EIRKQVDDAI AKAKESSMPD TSELFTNVYK KGFGVESFGP DRKEMRASLP

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.