Factsheet for Os02t0739600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
extracellular: 26194822
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 26194822 doi

WK Cho, TK Hyun, D Kumar, Y Rim, XY Chen, Y Jo, S Kim, KW Lee, ZY Park, WJ Lucas, JY Kim

Department of Industrial Plant Science and Technology, College of Agricultural, Life and Environmental Sciences, Chungbuk National University, Cheongju 361-763, Korea., Department of Life Science, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea., Department of Plant Biology, University of California, Davis, CA 95616, USA., Division of Applied Life Science (BK21plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017985_P001	Maize	mitochondrion	94.1	94.1
EES05555	Sorghum	mitochondrion	93.59	93.59
TraesCS6A01G311800.1	Wheat	golgi	88.46	92.99
Zm00001d052289_P001	Maize	mitochondrion	92.56	92.56
TraesCS6D01G291100.1	Wheat	mitochondrion	91.03	91.49
TraesCS6B01G342000.1	Wheat	mitochondrion	90.77	91.24
HORVU6Hr1G076810.1	Barley	plastid	91.54	88.37
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	72.05	86.73
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	63.33	84.88
CDY70124	Canola	cytosol	30.77	82.76
CDY31596	Canola	mitochondrion	14.1	82.09
CDY24500	Canola	mitochondrion	80.26	80.46
Bra035416.1-P	Field mustard	mitochondrion	80.26	80.46
Os06t0246500-01	Rice	plastid	82.05	80.4
KRH69435	Soybean	mitochondrion	81.54	80.3
CDY33613	Canola	mitochondrion	80.0	80.21
Solyc05g006520.2.1	Tomato	plastid	80.26	80.05
PGSC0003DMT400058223	Potato	mitochondrion	80.26	80.05
AT1G59900.1	Thale cress	mitochondrion	79.23	79.43
CDY38784	Canola	mitochondrion	79.49	79.08
KRH45768	Soybean	mitochondrion	79.74	78.93
CDY16236	Canola	mitochondrion	78.21	78.81
AT1G24180.1	Thale cress	mitochondrion	79.23	78.63
CDY11622	Canola	mitochondrion	78.97	78.57
Bra024643.1-P	Field mustard	mitochondrion	77.69	78.29
CDY28458	Canola	mitochondrion	78.97	77.97
KRG99219	Soybean	mitochondrion	68.72	77.91
KRH74712	Soybean	mitochondrion	73.08	77.87
Bra012418.1-P	Field mustard	mitochondrion	78.72	77.53
CDY40292	Canola	mitochondrion	78.46	77.47
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	78.97	77.39
PGSC0003DMT400004851	Potato	mitochondrion	76.92	77.32
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	77.44	77.24
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	78.72	77.14
Bra016238.1-P	Field mustard	mitochondrion	78.46	76.5
CDY55062	Canola	cytosol	33.59	69.68
Bra017890.1-P	Field mustard	cytosol	15.38	66.67
KRG95283	Soybean	cytosol, mitochondrion, plastid	27.69	65.85
CDY14675	Canola	cytosol	73.08	64.77
CDY55064	Canola	plasma membrane	51.28	60.98
Os04t0119400-01	Rice	plastid	37.95	34.82
Os12t0183100-01	Rice	mitochondrion	27.69	22.22
Os02t0739700-01	Rice	plastid	1.79	1.59

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	EntrezGene:4330673
EMBL:AK098950	ProteinID:BAD16048.1	ProteinID:BAF09982.1	ProteinID:BAS80837.1	ncoils:Coil	InterPro:DH_E1
ProteinID:EAZ24558.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114
EnsemblPlantsGene:Os02g0739600	EnsemblPlants:Os02t0739600-01	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y
UniProt:Q6Z5N4	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0000358C5D	RefSeq:XP_015626335.1
SEG:seg	:	:	:	:	:

Description

PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1Similar to Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A). (Os02t0739600-01)

Coordinates

chr2:-:30918848..30922942

Molecular Weight (calculated)

42704.2 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.230

Length

390 amino acids

Sequence
(BLAST)

001: MAAAILLRRV PPARAQATAL IAARSISDST APLTIETSVP FTSHIVDPPS RDVTTTPAEL LTFFRDMSVM RRMEIAADSL YKAKLIRGFC HLYDGQEAVA
101: VGMEAAITRS DSIITAYRDH CTYLARGGDL VSAFAELMGR QAGCSRGKGG SMHFYKKDAN FYGGHGIVGA QVPLGCGLAF AQKYRKEETA TFALYGDGAA
201: NQGQLFEALN ISALWKLPAI LVCENNHYGM GTAEWRAAKS PAYYKRGDYV PGLKVDGMDV LAVKQACKFA KEHAIANGPI VLEMDTYRYH GHSMSDPGST
301: YRTRDEISGV RQERDPIERV RKLILAHDLA TAAELKDMEK EIRKEVDDAI AKAKESPMPD TSELFTNVYV KGFGVESFGA DRKELRATLP

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.