Factsheet for Os04t0119400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0536000-01
Os09t0509200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	Os08t0536000-01	AT5G50850.1	21798944
AT1G01090.1	Os09t0509200-01	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	23.29	96.12
TraesCS2B01G012500.1	Wheat	plastid	90.12	90.97
TraesCS2A01G010100.1	Wheat	plastid	90.12	90.97
TraesCS2D01G010700.1	Wheat	golgi	89.65	90.71
Zm00001d004473_P001	Maize	plastid	91.29	90.65
EES10385	Sorghum	plastid	89.88	88.63
CDY37428	Canola	cytosol	29.65	85.71
CDY37427	Canola	cytosol, mitochondrion, plastid	30.59	84.42
HORVU2Hr1G001600.1	Barley	plastid	87.53	81.4
GSMUA_Achr11P...	Banana	plastid	78.82	77.91
VIT_15s0048g02580.t01	Wine grape	plastid	77.41	75.98
KRH68960	Soybean	plastid	73.88	75.12
KRH47800	Soybean	plastid	75.29	74.07
CDY37473	Canola	plastid	73.65	74.0
Bra033286.1-P	Field mustard	plastid	73.88	73.71
CDX90009	Canola	plastid	73.88	73.71
Bra032619.1-P	Field mustard	plastid	73.65	73.65
CDY32445	Canola	plastid	73.65	73.65
KRH06359	Soybean	nucleus	74.82	73.61
AT1G01090.1	Thale cress	plastid	74.12	73.6
KRG97240	Soybean	plastid	73.88	73.54
CDY15202	Canola	plastid	73.88	73.19
PGSC0003DMT400035288	Potato	plastid	74.35	72.31
Solyc12g009400.1.1	Tomato	plastid	73.41	70.91
Solyc12g009410.1.1	Tomato	plastid	73.41	70.91
PGSC0003DMT400007571	Potato	plastid	73.18	70.68
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	46.82	69.82
Os02t0739600-01	Rice	mitochondrion	34.82	37.95
Os06t0246500-01	Rice	plastid	34.82	37.19
GSMUA_Achr5P18750_001	Banana	plastid	72.94	34.37
Os12t0183100-01	Rice	mitochondrion	22.35	19.55
Os02t0739700-01	Rice	plastid	0.47	0.45

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	EntrezGene:4334968	MapMan:5.1.2.2.1.1
EMBL:AK069299	ProteinID:BAF13979.1	ProteinID:BAS87641.1	ProteinID:CAE01294.2	ncoils:Coil	InterPro:DH_E1
ProteinID:EAZ29517.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624
GO:GO:0043231	GO:GO:0055114	EnsemblPlantsGene:Os04g0119400	EnsemblPlants:Os04t0119400-01	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	UniProt:Q7XTJ3	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182
UniParc:UPI00001AE51D	RefSeq:XP_015636508.1	SEG:seg	:	:	:

Description

Similar to Pyruvate dehydrogenase E1 component, alpha subunit. (Os04t0119400-01)

Coordinates

chr4:+:1136017..1139638

Molecular Weight (calculated)

46147.2 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.190

Length

425 amino acids

Sequence
(BLAST)

001: MAAASSFTAA AKFLAPVSAR SAGDYKPPLP LPASASLRPG RKPAPRLRTA LAVSSDVLPG NKAAPAAAAH SAVTREEALE LYEDMVLGRI FEDMCAQMYY
101: RGKMFGFVHL YNGQEAVSTG FIKLLNQADC VVSTYRDHVH ALSKGVPARS VMAELFGKAT GCCRGQGGSM HMFSEPHNLL GGFAFIGEGI PVATGAAFAA
201: KYRHEVLKQS SPDGLDVTLA FFGDGTCNNG QFFECLNMAQ LWKLPIVFVV ENNLWAIGMS HLRATSDPEI YKKGPAFGMP GVHVDGMDVL KVREVAKEAI
301: ERARRGEGPT LVECETYRFR GHSLADPDEL RRPDEKSHYA ARDPITALKK YIIEQNLATE SELKSIEKKI DDVVEEAVEF ADASPLPPRS QLLENVFSDP
401: KGFGIGPDGK YRCEDPLFTQ GTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.