Factsheet for TraesCS2D01G010700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G291500.1
TraesCS5B01G290600.1
TraesCS5D01G299000.1
TraesCS7A01G263300.1
TraesCS7B01G161100.1
TraesCS7D01G263900.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	TraesCS5A01G291500.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS5B01G290600.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS5D01G299000.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7A01G263300.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7B01G161100.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7D01G263900.2	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	24.52	100.0
TraesCS2B01G012500.1	Wheat	plastid	99.05	98.81
TraesCS2A01G010100.1	Wheat	plastid	97.62	97.39
Os04t0119400-01	Rice	plastid	90.71	89.65
Zm00001d004473_P001	Maize	plastid	90.48	88.78
EES10385	Sorghum	plastid	89.05	86.77
CDY37428	Canola	cytosol	30.24	86.39
CDY37427	Canola	cytosol, mitochondrion, plastid	31.19	85.06
HORVU2Hr1G001600.1	Barley	plastid	91.9	84.46
GSMUA_Achr11P...	Banana	plastid	80.0	78.14
VIT_15s0048g02580.t01	Wine grape	plastid	78.1	75.75
CDY37473	Canola	plastid	75.71	75.18
KRH68960	Soybean	plastid	74.76	75.12
Bra033286.1-P	Field mustard	plastid	75.95	74.88
CDX90009	Canola	plastid	75.95	74.88
Bra032619.1-P	Field mustard	plastid	75.71	74.82
CDY32445	Canola	plastid	75.71	74.82
CDY15202	Canola	plastid	75.95	74.36
AT1G01090.1	Thale cress	plastid	75.71	74.3
KRH47800	Soybean	plastid	75.95	73.84
KRH06359	Soybean	nucleus	75.95	73.84
KRG97240	Soybean	plastid	74.76	73.54
PGSC0003DMT400035288	Potato	plastid	75.95	73.0
Solyc12g009400.1.1	Tomato	plastid	75.48	72.05
Solyc12g009410.1.1	Tomato	plastid	75.48	72.05
PGSC0003DMT400007571	Potato	plastid	75.24	71.82
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	47.14	69.47
TraesCS6D01G291100.1	Wheat	mitochondrion	34.52	37.37
TraesCS7D01G199900.1	Wheat	golgi	33.57	35.79
GSMUA_Achr5P18750_001	Banana	plastid	73.33	34.15
TraesCS5D01G126700.1	Wheat	mitochondrion	21.9	19.62

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016624	GO:GO:0043231	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	EnsemblPlantsGene:TraesCS2D01G010700	EnsemblPlants:TraesCS2D01G010700.1	TIGR:cd02000
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:5320843..5323986

Molecular Weight (calculated)

45929.8 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.234

Length

420 amino acids

Sequence
(BLAST)

001: MAAASFTAAK FLAPAAARSG GDRAPFPAPS AFSMRSLRHR PARRLSSVLA VSSDVLKAAP AAAAYPAVTR EEALELYEDM ILGRNFEDMC AQMYYRGKMF
101: GFVHLYNGQE AVSTGFIKQL NQPDCVVSTY RDHVHALSKG VPARAVMAEL FGKATGCCRG QGGSMHMFSE PHNLLGGFAF IGEGIPVATG AAFAAKYRHE
201: VLKQSSPDGL DVTLAFFGDG TCNNGQFFEC LNMAQLWKLP IIFVVENNLW AIGMSHLRST SDPEIWKKGP AFGMPGVHVD GMDVLKVREV AKEAIDRARR
301: GEGPTLVECE TYRFRGHSLA DPDELRRPDE KSHYAARDPI TSLKKYIIEQ NLASEAELKN IEKKIDDVVE EAVEFADASP LPPRSQLLEN VFADPKGFGI
401: GPDGKYRCED PKFTQGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.