Factsheet for TraesCS7B01G161100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 21043471
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	TraesCS6A01G311800.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6B01G342000.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6D01G291100.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7A01G238900.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7B01G103800.2	AT1G59900.1	21798944
AT5G50850.1	TraesCS7D01G199900.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G263300.1	Wheat	plastid	99.73	99.73
HORVU7Hr1G055090.3	Barley	mitochondrion	99.73	99.46
TraesCS7D01G263900.2	Wheat	mitochondrion	97.83	98.63
Os08t0536000-01	Rice	mitochondrion	92.95	91.71
TraesCS5B01G290600.1	Wheat	mitochondrion	89.7	88.03
KXG25507	Sorghum	mitochondrion	89.16	87.97
KRH16935	Soybean	mitochondrion	84.01	86.11
KRH73802	Soybean	mitochondrion	83.47	85.56
KRH14338	Soybean	mitochondrion	82.66	84.72
VIT_01s0146g00310.t01	Wine grape	mitochondrion	83.2	83.65
CDX84881	Canola	mitochondrion	83.2	83.65
CDY45814	Canola	mitochondrion	83.2	83.65
Bra026451.1-P	Field mustard	mitochondrion	78.05	83.48
AT5G50850.1	Thale cress	mitochondrion	82.11	83.47
CDY16348	Canola	mitochondrion	82.66	83.33
CDX91560	Canola	mitochondrion	82.66	83.33
CDX71636	Canola	mitochondrion	81.84	82.97
Bra022757.1-P	Field mustard	mitochondrion	82.38	82.83
Solyc06g072580.2.1	Tomato	nucleus	82.38	82.83
CDY05827	Canola	mitochondrion	81.57	82.69
PGSC0003DMT400011072	Potato	mitochondrion	82.38	82.38
Zm00001d031659_P001	Maize	mitochondrion	88.62	82.37
Bra022529.1-P	Field mustard	mitochondrion	81.57	82.24
VIT_17s0000g00690.t01	Wine grape	mitochondrion	79.4	81.84
Solyc03g097680.2.1	Tomato	plastid	81.57	81.57
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	46.34	78.8
PGSC0003DMT400069263	Potato	mitochondrion	81.84	78.65
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	86.18	76.81
Bra035715.1-P	Field mustard	mitochondrion	79.67	64.9
TraesCS5B01G376400.1	Wheat	plastid	39.02	36.64
TraesCS5B01G030400.1	Wheat	plastid	36.86	34.61
TraesCS6B01G050600.1	Wheat	mitochondrion	24.12	31.79

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
EnsemblPlantsGene:TraesCS7B01G161100	EnsemblPlants:TraesCS7B01G161100.1	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	TIGR:cd07036

Description

No Description!

Coordinates

chr7B:+:220121566..220128134

Molecular Weight (calculated)

39551.4 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.000

Length

369 amino acids

Sequence
(BLAST)

001: MLGAARRSGC VLGQLMQTLR PAATAARSYS ATPKEMTVRE ALNSALDEEM SADPSVFLMG EEVGEYQGAY KITKGLLDKY GPDRVLDTPI TEAGFTGIGV
101: GAAYQGLRPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ ISVPIVFRGP NGAAAGVGAQ HSQCYAAWYA HVPGLKVLTP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPIKAEVL DSSFSVPIGK AKIEREGKDV TITAFSKMVG YALQAAEILS KEGISAEVIN LRSIRPLDRA AINASVRKTN RLVTVEEGFP
301: QHGVGAEICM SVVEDSFEYL DAPVERIAGA DVPMPYAANL ERLAVPQVED IVRAAKRACY RSSSMAANA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.