Factsheet for GSMUA_Achr5P25000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18330_001
GSMUA_Achr7P05520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	GSMUA_Achr1P18330_001	AT1G59900.1	21798944
AT5G50850.1	GSMUA_Achr7P05520_001	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16935	Soybean	mitochondrion	75.85	87.22
KRH73802	Soybean	mitochondrion	75.85	87.22
KRH14338	Soybean	mitochondrion	75.6	86.94
Os08t0536000-01	Rice	mitochondrion	78.26	86.63
TraesCS7B01G161100.1	Wheat	mitochondrion	76.81	86.18
Zm00001d006107_P001	Maize	mitochondrion	77.78	86.1
HORVU7Hr1G055090.3	Barley	mitochondrion	76.81	85.95
TraesCS7A01G263300.1	Wheat	plastid	76.57	85.91
EER97019	Sorghum	mitochondrion	77.78	85.87
KXG25507	Sorghum	mitochondrion	77.54	85.83
VIT_01s0146g00310.t01	Wine grape	mitochondrion	75.6	85.29
TraesCS7D01G263900.2	Wheat	mitochondrion	75.36	85.25
Os09t0509200-01	Rice	mitochondrion	77.29	85.11
TraesCS5A01G291500.1	Wheat	golgi	76.33	84.04
TraesCS5B01G290600.1	Wheat	mitochondrion	76.09	83.78
TraesCS5D01G299000.1	Wheat	mitochondrion	76.09	83.78
PGSC0003DMT400011072	Potato	mitochondrion	73.91	82.93
Solyc03g097680.2.1	Tomato	plastid	73.19	82.11
Zm00001d031659_P001	Maize	mitochondrion	78.26	81.61
CDX91560	Canola	mitochondrion	71.74	81.15
CDY16348	Canola	mitochondrion	71.74	81.15
Bra026451.1-P	Field mustard	mitochondrion	67.39	80.87
CDX84881	Canola	mitochondrion	71.5	80.65
Solyc06g072580.2.1	Tomato	nucleus	71.5	80.65
CDX71636	Canola	mitochondrion	70.77	80.49
CDY05827	Canola	mitochondrion	70.77	80.49
AT5G50850.1	Thale cress	mitochondrion	70.53	80.44
CDY45814	Canola	mitochondrion	71.26	80.38
Bra022529.1-P	Field mustard	mitochondrion	70.77	80.05
Bra022757.1-P	Field mustard	mitochondrion	70.77	79.84
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	41.79	79.72
Zm00001d021070_P002	Maize	mitochondrion	77.29	77.86
PGSC0003DMT400069263	Potato	mitochondrion	71.5	77.08
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	77.05	74.01
Bra035715.1-P	Field mustard	mitochondrion	68.84	62.91
GSMUA_Achr5P02560_001	Banana	plastid	30.92	34.5
GSMUA_Achr4P31470_001	Banana	mitochondrion	21.74	34.48
GSMUA_Achr8P20340_001	Banana	mitochondrion	26.81	29.6
GSMUA_Achr2P12960_001	Banana	vacuole	4.11	27.42

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G25000_001	EnsemblPlants:GSMUA_Achr5P25000_001	EnsemblPlants:GSMUA_Achr5T25000_001
InterPro:IPR009014	UniProt:M0T1H5	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000294EFCD	SEG:seg	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G25000_001]

Coordinates

chr5:-:26173329..26180981

Molecular Weight (calculated)

44994.3 Da

IEP (calculated)

7.535

GRAVY (calculated)

0.002

Length

414 amino acids

Sequence
(BLAST)

001: MAPSDSLFEV NVWRRLLRPR HQTESSSSLP SLRSFLWPFS ISRKMLGVVR RKLGFGLLSA TRVLPAGSVL PKKYSTAAKE ITVREALNTA LDEEMSADPK
101: VFLMGEEVGE YQGAYKISKG LLEKYGPDRV LDTPITEAGF TGIGVGAAYY GLRPVVEFMT FNFSMQAIDH IINSAAKSNY MSAGQISVPI VFRGPNGAAA
201: GVGAQHSQCY AAWYAHVPGL KVLSPYSSED ARGLLKAAIR DPDPVVFLEN ELLYGESFPV SAEVLDSSFC LPIGKAKIER EGKHVTVTAF SKMVGYALQA
301: AEILSKEGIS AEVINLRSIR PLDRATINAS VRKTNRLVTV EEGFPQHGVG AEICMSVMEE SFEYLDAPVE RIAGADVPMP YAANLERMAV PQVDDIVRAA
401: KRACYRSVSM AAAA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.