Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 8
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
27780359
nucleus: 28499913 |
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50850.1 | KRG95283 | AT1G59900.1 | 21798944 |
| AT5G50850.1 | KRG99219 | AT1G59900.1 | 21798944 |
| AT5G50850.1 | KRH45768 | AT1G59900.1 | 21798944 |
| AT5G50850.1 | KRH69435 | AT1G59900.1 | 21798944 |
| AT5G50850.1 | KRH74712 | AT1G59900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73802 | Soybean | mitochondrion | 98.33 | 98.33 |
| KRH16935 | Soybean | mitochondrion | 95.28 | 95.28 |
| VIT_01s0146g00310.t01 | Wine grape | mitochondrion | 87.5 | 85.83 |
| PGSC0003DMT400011072 | Potato | mitochondrion | 85.83 | 83.74 |
| Os08t0536000-01 | Rice | mitochondrion | 86.94 | 83.69 |
| Solyc06g072580.2.1 | Tomato | nucleus | 84.72 | 83.11 |
| Os09t0509200-01 | Rice | mitochondrion | 86.67 | 82.98 |
| Solyc03g097680.2.1 | Tomato | plastid | 85.0 | 82.93 |
| KXG25507 | Sorghum | mitochondrion | 86.11 | 82.89 |
| EER97019 | Sorghum | mitochondrion | 86.11 | 82.67 |
| TraesCS7B01G161100.1 | Wheat | mitochondrion | 84.72 | 82.66 |
| Zm00001d006107_P001 | Maize | mitochondrion | 85.83 | 82.62 |
| TraesCS7D01G263900.2 | Wheat | mitochondrion | 83.89 | 82.51 |
| HORVU7Hr1G055090.3 | Barley | mitochondrion | 84.72 | 82.43 |
| TraesCS7A01G263300.1 | Wheat | plastid | 84.44 | 82.38 |
| TraesCS5B01G290600.1 | Wheat | mitochondrion | 85.56 | 81.91 |
| TraesCS5A01G291500.1 | Wheat | golgi | 85.28 | 81.65 |
| TraesCS5D01G299000.1 | Wheat | mitochondrion | 85.0 | 81.38 |
| AT5G50850.1 | Thale cress | mitochondrion | 81.39 | 80.72 |
| CDX84881 | Canola | mitochondrion | 82.22 | 80.65 |
| CDY16348 | Canola | mitochondrion | 81.94 | 80.6 |
| CDX91560 | Canola | mitochondrion | 81.94 | 80.6 |
| CDX71636 | Canola | mitochondrion | 81.39 | 80.49 |
| CDY05827 | Canola | mitochondrion | 81.11 | 80.22 |
| CDY45814 | Canola | mitochondrion | 81.39 | 79.84 |
| Bra026451.1-P | Field mustard | mitochondrion | 76.39 | 79.71 |
| Bra022529.1-P | Field mustard | mitochondrion | 80.83 | 79.51 |
| Bra022757.1-P | Field mustard | mitochondrion | 80.83 | 79.29 |
| Zm00001d031659_P001 | Maize | mitochondrion | 86.39 | 78.34 |
| PGSC0003DMT400069263 | Potato | mitochondrion | 83.06 | 77.86 |
| GSMUA_Achr8P09180_001 | Banana | extracellular, mitochondrion, peroxisome | 46.67 | 77.42 |
| GSMUA_Achr5P25000_001 | Banana | mitochondrion, plastid | 86.94 | 75.6 |
| Zm00001d021070_P002 | Maize | mitochondrion | 84.44 | 73.97 |
| HORVU5Hr1G077200.2 | Barley | mitochondrion, plastid | 84.44 | 70.53 |
| Bra035715.1-P | Field mustard | mitochondrion | 79.44 | 63.13 |
| KRH58644 | Soybean | nucleus | 40.56 | 36.05 |
| KRH05520 | Soybean | plastid | 40.28 | 35.98 |
| KRH15497 | Soybean | plastid | 40.0 | 35.56 |
| KRH42550 | Soybean | plastid | 40.0 | 35.47 |
| KRH65916 | Soybean | mitochondrion | 30.0 | 30.17 |
| KRH75712 | Soybean | mitochondrion | 29.72 | 30.06 |
Protein Annotations
| KEGG:00010+1.2.4.1 | KEGG:00020+1.2.4.1 | KEGG:00620+1.2.4.1 | EntrezGene:100777306 | MapMan:2.2.1.1.2 | Gene3D:3.40.50.920 |
| Gene3D:3.40.50.970 | EMBL:ACUP02008499 | EnsemblPlantsGene:GLYMA_14G020200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004739 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005759 |
| GO:GO:0005975 | GO:GO:0006086 | GO:GO:0006091 | GO:GO:0006096 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0055114 |
| UniProt:I1M6N5 | InterPro:IPR009014 | ProteinID:KRH14335.1 | ProteinID:KRH14336.1 | ProteinID:KRH14337.1 | EnsemblPlants:KRH14338 |
| ProteinID:KRH14338 | ProteinID:KRH14338.1 | ProteinID:KRH14339.1 | ProteinID:KRH14340.1 | ProteinID:KRH14341.1 | InterPro:PDHB |
| PFAM:PF02779 | PFAM:PF02780 | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF94 | SMART:SM00861 | SUPFAM:SSF52518 |
| SUPFAM:SSF52922 | InterPro:THDP-binding | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd | InterPro:Transketolase_C | UniParc:UPI000233AE43 |
Description
hypothetical protein
Coordinates
chr14:-:1435228..1440374
Molecular Weight (calculated)
38777.5 Da
IEP (calculated)
6.002
GRAVY (calculated)
0.003
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGVIRHKSI RHAFSAIRHL SSAAKEITVR EALNSALDEE MSADPKVFLM GEEVGEYQGA YKISKGLLEK FGPERVLDTP ITEAGFAGIG VGAAYYGLRP
101: VVEFMTFNFS MQAIDHIINS AAKSNYMSAG QISVPIVFRG PNGAAAGVGA QHSQCYASWY GSCPGLKVLS PYSSEDARGL LKAAIRDPDP VVFLENELLY
201: GESFPVSAEV LDSSFCLPIG KAKIEREGKD VTITAYSKMV GYALKAAETL AKEGISAEVI NLRSIRPLDR STINTSVRKT NRLVTVEEGF PQHGVGAEIC
301: TSVIEESFGY LDAPVERIAG ADVPMPYAAN LERMAVPQVE DIVRAAKRTC YRSVPLAASA
101: VVEFMTFNFS MQAIDHIINS AAKSNYMSAG QISVPIVFRG PNGAAAGVGA QHSQCYASWY GSCPGLKVLS PYSSEDARGL LKAAIRDPDP VVFLENELLY
201: GESFPVSAEV LDSSFCLPIG KAKIEREGKD VTITAYSKMV GYALKAAETL AKEGISAEVI NLRSIRPLDR STINTSVRKT NRLVTVEEGF PQHGVGAEIC
301: TSVIEESFGY LDAPVERIAG ADVPMPYAAN LERMAVPQVE DIVRAAKRTC YRSVPLAASA
001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK
Arabidopsis Description
PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.