Factsheet for Zm00001d031659_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014514_P001
Zm00001d014833_P001
Zm00001d017985_P001
Zm00001d044748_P002
Zm00001d052289_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Zm00001d014514_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d014833_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d017985_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d044748_P002	AT1G59900.1	21798944
AT5G50850.1	Zm00001d052289_P001	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25507	Sorghum	mitochondrion	93.2	98.93
Os08t0536000-01	Rice	mitochondrion	86.15	91.44
Zm00001d006107_P001	Maize	mitochondrion	85.14	90.37
HORVU7Hr1G055090.3	Barley	mitochondrion	82.62	88.65
TraesCS7B01G161100.1	Wheat	mitochondrion	82.37	88.62
TraesCS7A01G263300.1	Wheat	plastid	82.12	88.35
TraesCS7D01G263900.2	Wheat	mitochondrion	81.11	87.98
KRH16935	Soybean	mitochondrion	79.35	87.5
KRH73802	Soybean	mitochondrion	79.09	87.22
KRH14338	Soybean	mitochondrion	78.34	86.39
VIT_01s0146g00310.t01	Wine grape	mitochondrion	77.33	83.65
CDX71636	Canola	mitochondrion	76.07	82.97
PGSC0003DMT400011072	Potato	mitochondrion	77.08	82.93
Solyc03g097680.2.1	Tomato	plastid	76.57	82.38
AT5G50850.1	Thale cress	mitochondrion	75.31	82.37
CDY16348	Canola	mitochondrion	75.57	81.97
CDX91560	Canola	mitochondrion	75.57	81.97
CDY05827	Canola	mitochondrion	75.06	81.87
Solyc06g072580.2.1	Tomato	nucleus	75.57	81.74
Bra026451.1-P	Field mustard	mitochondrion	71.03	81.74
VIT_17s0000g00690.t01	Wine grape	mitochondrion	73.55	81.56
CDY45814	Canola	mitochondrion	75.31	81.47
CDX84881	Canola	mitochondrion	75.31	81.47
Bra022757.1-P	Field mustard	mitochondrion	74.81	80.93
Bra022529.1-P	Field mustard	mitochondrion	74.56	80.87
Zm00001d021070_P002	Maize	mitochondrion	82.62	79.81
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	81.61	78.26
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	42.57	77.88
PGSC0003DMT400069263	Potato	mitochondrion	74.31	76.82
Bra035715.1-P	Field mustard	mitochondrion	73.55	64.46
Zm00001d000227_P001	Maize	cytosol	34.76	43.26
Zm00001d033225_P002	Maize	plastid	36.27	37.6
Zm00001d007892_P001	Maize	mitochondrion	28.46	31.13

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
UniProt:A0A1D6KKD1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	ProteinID:ONM03379.1
InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI000844843B	EnsemblPlantsGene:Zm00001d031659	EnsemblPlants:Zm00001d031659_P001	EnsemblPlants:Zm00001d031659_T001	SEG:seg	:

Description

pyruvate dehydrogenase2 pyruvate dehydrogenase2

Coordinates

chr1:+:197760195..197776370

Molecular Weight (calculated)

42336.9 Da

IEP (calculated)

5.997

GRAVY (calculated)

0.044

Length

397 amino acids

Sequence
(BLAST)

001: MLGVARRRLG SGCVSALPPP GSPPSLRSHR DPFLSPQVLA QLAQALRPAA APARTYSAAA KEITVREALN TALDEEMSAD PSVFLMGEEV GEYQGAYKIS
101: KGLLDKYGPD RVLDTPITEA GFTGIGVGAA YHGLRPIVEF MTFNFSMQAI DHIINSAAKS NYMSAGQISV PIVFRGPNGA AAGVGAQHSQ CYAAWYAHVP
201: GLKVLAPYSA EDARGLLKAA IRDPDPVVFL ENELLYGESF PVSAEVLDSS FCLPIGKAKI ERQGKDVTIT AFSKMVGYAL QAADILAKEG ISAEVINLRS
301: IRPLDRATIN ASVRKTNRLV TVEEGFPQHG IGAEICMSVV EDSFEYLDAP VERIAGADVP MPYAANLERM AVPQVDDIVR AAKRACYRAA VPMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.