Factsheet for Solyc03g097680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g005080.2.1
Solyc04g025710.1.1
Solyc05g006520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Solyc04g005080.2.1	AT1G59900.1	21798944
AT5G50850.1	Solyc04g025710.1.1	AT1G59900.1	21798944
AT5G50850.1	Solyc05g006520.2.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011072	Potato	mitochondrion	96.21	96.21
Solyc06g072580.2.1	Tomato	nucleus	86.18	86.65
KRH73802	Soybean	mitochondrion	83.74	85.83
KRH16935	Soybean	mitochondrion	83.74	85.83
KRH14338	Soybean	mitochondrion	82.93	85.0
TraesCS5A01G291500.1	Wheat	golgi	84.28	82.71
TraesCS5B01G290600.1	Wheat	mitochondrion	84.28	82.71
TraesCS5D01G299000.1	Wheat	mitochondrion	84.01	82.45
Os08t0536000-01	Rice	mitochondrion	83.47	82.35
Zm00001d006107_P001	Maize	mitochondrion	83.2	82.09
AT5G50850.1	Thale cress	mitochondrion	80.49	81.82
HORVU7Hr1G055090.3	Barley	mitochondrion	81.84	81.62
TraesCS7B01G161100.1	Wheat	mitochondrion	81.57	81.57
CDX84881	Canola	mitochondrion	81.03	81.47
CDY16348	Canola	mitochondrion	80.76	81.42
EER97019	Sorghum	mitochondrion	82.66	81.33
TraesCS7A01G263300.1	Wheat	plastid	81.3	81.3
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.86	81.28
CDY45814	Canola	mitochondrion	80.76	81.2
Bra026451.1-P	Field mustard	mitochondrion	75.88	81.16
TraesCS7D01G263900.2	Wheat	mitochondrion	80.49	81.15
CDX91560	Canola	mitochondrion	80.49	81.15
KXG25507	Sorghum	mitochondrion	82.11	81.02
Os09t0509200-01	Rice	mitochondrion	82.38	80.85
CDX71636	Canola	mitochondrion	79.67	80.77
CDY05827	Canola	mitochondrion	79.67	80.77
Bra022757.1-P	Field mustard	mitochondrion	80.22	80.65
Bra022529.1-P	Field mustard	mitochondrion	79.67	80.33
Zm00001d031659_P001	Maize	mitochondrion	82.38	76.57
Solyc05g024160.2.1	Tomato	mitochondrion	76.42	76.01
Zm00001d021070_P002	Maize	mitochondrion	81.84	73.48
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	43.09	73.27
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	82.11	73.19
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	84.01	71.93
Bra035715.1-P	Field mustard	mitochondrion	77.78	63.36
Solyc08g016750.2.1	Tomato	plastid	38.75	35.05
Solyc04g008590.2.1	Tomato	plastid	38.75	35.05
Solyc01g028900.2.1	Tomato	plastid	31.44	32.4

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	UniProt:K4BJI5	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	EnsemblPlantsGene:Solyc03g097680.2	EnsemblPlants:Solyc03g097680.2.1	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	UniParc:UPI000276857B	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:K4BJI5]

Coordinates

chr3:+:60009332..60016213

Molecular Weight (calculated)

39515.5 Da

IEP (calculated)

5.811

GRAVY (calculated)

0.025

Length

369 amino acids

Sequence
(BLAST)

001: MATRGISALN MNQFLLGSRV FASRNFSSAT KEMTVRDALN SALDEEMSAD PKVFIMGEEV GEYQGAYKIT KGLLNKYGPQ RVLDTPITEA GFTGMGVGAA
101: YHGLKPVIEF MTFNFSMQAI DHIINSAAKS NYMSAGQIAV PIVFRGPNGA AAGVGAQHSQ CYAAWFGACP GLKVLAPYSS EDARGLLKAA IRDPDPVVFL
201: ENELLYGESF PVSAEVLDSS FALPIGKAKI EREGKDITIT AFSKMVGSAL KAAEILAKEG ISAEVINLRS IRPLDRSTIN ASVRKTNRLL TVEEGFPQHG
301: VGAEICASVV EESFEYLDAP VERISGADVP MPYAANLERM AVPQIEDIVR GAKRACYRAA KSVPMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.