Factsheet for PGSC0003DMT400011072

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004851
PGSC0003DMT400058223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	PGSC0003DMT400004851	AT1G59900.1	21798944
AT5G50850.1	PGSC0003DMT400058223	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097680.2.1	Tomato	plastid	96.21	96.21
KRH73802	Soybean	mitochondrion	84.28	86.39
KRH16935	Soybean	mitochondrion	84.28	86.39
KRH14338	Soybean	mitochondrion	83.74	85.83
PGSC0003DMT400069263	Potato	mitochondrion	86.72	83.33
Os08t0536000-01	Rice	mitochondrion	83.74	82.62
TraesCS5A01G291500.1	Wheat	golgi	84.01	82.45
HORVU7Hr1G055090.3	Barley	mitochondrion	82.66	82.43
TraesCS7B01G161100.1	Wheat	mitochondrion	82.38	82.38
Zm00001d006107_P001	Maize	mitochondrion	83.47	82.35
TraesCS5B01G290600.1	Wheat	mitochondrion	83.74	82.18
TraesCS5D01G299000.1	Wheat	mitochondrion	83.74	82.18
TraesCS7A01G263300.1	Wheat	plastid	82.11	82.11
TraesCS7D01G263900.2	Wheat	mitochondrion	81.3	81.97
EER97019	Sorghum	mitochondrion	82.93	81.6
KXG25507	Sorghum	mitochondrion	82.66	81.55
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.86	81.28
Os09t0509200-01	Rice	mitochondrion	82.38	80.85
CDY05827	Canola	mitochondrion	79.67	80.77
AT5G50850.1	Thale cress	mitochondrion	79.4	80.72
CDX84881	Canola	mitochondrion	80.22	80.65
CDX91560	Canola	mitochondrion	79.95	80.6
CDY16348	Canola	mitochondrion	79.95	80.6
CDX71636	Canola	mitochondrion	79.4	80.49
CDY45814	Canola	mitochondrion	79.67	80.11
Bra026451.1-P	Field mustard	mitochondrion	74.8	80.0
Bra022757.1-P	Field mustard	mitochondrion	79.13	79.56
Bra022529.1-P	Field mustard	mitochondrion	78.86	79.51
Zm00001d031659_P001	Maize	mitochondrion	82.93	77.08
PGSC0003DMT400065364	Potato	mitochondrion	76.69	76.08
Zm00001d021070_P002	Maize	mitochondrion	82.66	74.21
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	82.93	73.91
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	43.36	73.73
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	83.74	71.69
Bra035715.1-P	Field mustard	mitochondrion	77.78	63.36
PGSC0003DMT400019358	Potato	plastid	39.02	34.53
PGSC0003DMT400080554	Potato	plastid	38.21	32.34

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	UniProt:M0ZZ09	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	EnsemblPlantsGene:PGSC0003DMG401004334	PGSC:PGSC0003DMG401004334	EnsemblPlants:PGSC0003DMT400011072	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000294BCB2	:	:	:

Description

Pyruvate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG401004334]

Coordinates

chr3:-:45745807..45752816

Molecular Weight (calculated)

39623.6 Da

IEP (calculated)

5.811

GRAVY (calculated)

0.009

Length

369 amino acids

Sequence
(BLAST)

001: MATRGISALN MNQFLLGSRV FASRNFSSAT KEMTVRDALN SALDEEMSAD PKVFIMGEEV GEYQGAYKIT KGLLNKYGPQ RVLDTPITEA GFTGMGVGAA
101: YHGLKPVIEF MTFNFSMQAI DHIINSAAKS NYMSAGQISV PIVFRGPNGA AAGVGAQHSQ CYAAWFGACP GLKVLAPYSS EDARGLLKAA IRDPDPVVFL
201: ENELLYGESF PVSAEVLDSS FSLPIGKAKI EREGKDITIT AFSKMVGYAL KAAEILAKEG ISAEVINLRS IRPLDRSTIN ASVRKTNRLL TVEEGFPQHG
301: VGAEICASVV EESFEYLDAP VERISGADVP MPYAANLERM AVPQIEDIVR GAKRACYRAA KSVPMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.