Factsheet for TraesCS7D01G263900.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	TraesCS6A01G311800.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6B01G342000.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6D01G291100.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7A01G238900.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7B01G103800.2	AT1G59900.1	21798944
AT5G50850.1	TraesCS7D01G199900.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G055090.3	Barley	mitochondrion	98.91	97.84
TraesCS7B01G161100.1	Wheat	mitochondrion	98.63	97.83
TraesCS7A01G263300.1	Wheat	plastid	98.36	97.56
Os08t0536000-01	Rice	mitochondrion	92.62	90.64
TraesCS5D01G299000.1	Wheat	mitochondrion	89.62	87.23
KXG25507	Sorghum	mitochondrion	88.52	86.63
KRH16935	Soybean	mitochondrion	83.88	85.28
KRH73802	Soybean	mitochondrion	83.33	84.72
KRH14338	Soybean	mitochondrion	82.51	83.89
CDX84881	Canola	mitochondrion	83.61	83.38
CDY45814	Canola	mitochondrion	83.61	83.38
AT5G50850.1	Thale cress	mitochondrion	82.51	83.2
Bra026451.1-P	Field mustard	mitochondrion	78.42	83.19
CDY16348	Canola	mitochondrion	83.06	83.06
CDX91560	Canola	mitochondrion	83.06	83.06
CDX71636	Canola	mitochondrion	82.51	82.97
VIT_01s0146g00310.t01	Wine grape	mitochondrion	83.06	82.83
Solyc06g072580.2.1	Tomato	nucleus	83.06	82.83
CDY05827	Canola	mitochondrion	82.24	82.69
Bra022757.1-P	Field mustard	mitochondrion	82.79	82.56
Bra022529.1-P	Field mustard	mitochondrion	81.97	81.97
PGSC0003DMT400011072	Potato	mitochondrion	81.97	81.3
Zm00001d031659_P001	Maize	mitochondrion	87.98	81.11
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.96	80.73
Solyc03g097680.2.1	Tomato	plastid	81.15	80.49
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	46.72	78.8
PGSC0003DMT400069263	Potato	mitochondrion	82.51	78.65
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.25	75.36
Bra035715.1-P	Field mustard	mitochondrion	80.05	64.68
TraesCS5D01G384100.1	Wheat	golgi	39.07	36.39
TraesCS5D01G039000.1	Wheat	plastid	37.16	33.58
TraesCS6D01G041600.1	Wheat	mitochondrion	31.97	31.37

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
EnsemblPlantsGene:TraesCS7D01G263900	EnsemblPlants:TraesCS7D01G263900.2	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	TIGR:cd07036
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:244761198..244767384

Molecular Weight (calculated)

39235.0 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.001

Length

366 amino acids

Sequence
(BLAST)

001: MLGAARRSGC VLGQLMQTLR PAASAATAAR SYSATPKEMT VREALNSALD EEMSADPSVF LMGEEVGEYQ GAYKITKGLL DKYGPDRVLD TPITEAGFTG
101: IGVGAAYQGL RPVVEFMTFN FSMQAIDHII NSAAKSNYMS AGQISVPIVF RGPNGAAAGV GAQHSQCYAA WYAHVPGLKV LTPYSAEDAR GLLKAAIRDP
201: DPVVFLENEL LYGESFPIKA EVLDSSFSVP IGKAKIEREG KDVTITAFSK MVGYALQAAE ILSKEGISAE VINLRSIRPL DRAAINASVR KTNRLVTVEE
301: GFPQHGVGAE ICMSVVEDSF EYLDAPVERI AGADVPMPYA ANLERLAVPQ VEDIVRAAKR ACYRSS

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.