Factsheet for TraesCS6D01G041600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G036000.1	Wheat	mitochondrion	95.98	96.76
TraesCS6B01G050600.1	Wheat	mitochondrion	71.85	95.71
HORVU6Hr1G006560.2	Barley	mitochondrion	92.76	93.01
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	31.37	92.86
Zm00001d007892_P001	Maize	mitochondrion	83.38	85.67
Os07t0170100-01	Rice	mitochondrion	84.72	85.41
EER98039	Sorghum	mitochondrion	84.18	85.09
AT1G55510.1	Thale cress	mitochondrion	75.87	80.4
KRH75712	Soybean	mitochondrion	75.6	79.21
KRH65916	Soybean	mitochondrion	75.87	79.05
AT3G13450.1	Thale cress	mitochondrion	75.07	78.21
VIT_06s0004g00190.t01	Wine grape	mitochondrion	75.07	78.21
Solyc01g028900.2.1	Tomato	plastid	74.8	77.93
GSMUA_Achr8P20340_001	Banana	mitochondrion	78.02	77.6
HORVU5Hr1G114960.1	Barley	cytosol	42.09	76.59
CDY10556	Canola	mitochondrion	73.46	75.69
CDY02436	Canola	mitochondrion	72.12	68.62
Bra030856.1-P	Field mustard	mitochondrion	66.49	65.44
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	26.81	63.69
HORVU6Hr1G037690.1	Barley	plastid	26.01	57.74
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	24.13	57.32
TraesCS5D01G299000.1	Wheat	mitochondrion	33.51	33.24
TraesCS7D01G263900.2	Wheat	mitochondrion	31.37	31.97
TraesCS5D01G384100.1	Wheat	golgi	30.56	29.01
TraesCS5D01G039000.1	Wheat	plastid	29.22	26.91

Protein Annotations

EnsemblPlants:TraesCS6D01G041600.1	EnsemblPlantsGene:TraesCS6D01G041600	Gene3D:3.40.50.920	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	PFAM:PF02779	PFAM:PF02780	SEG:seg
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	TIGR:cd07036	MapMan:4.2.7.2.1.2	:

Description

No Description!

Coordinates

chr6D:-:17054044..17058642

Molecular Weight (calculated)

40001.0 Da

IEP (calculated)

7.064

GRAVY (calculated)

0.030

Length

373 amino acids

Sequence
(BLAST)

001: MATRALREVV GRRRVGATGI GGGRRFSDSA AAAAAAAPVG AAERGDGGGG KAVNLFTAVN QALHIALDTD PRSYVFGEDV GFGGVFRCTT GLADRFGKQR
101: VFNTPLCEQG IAGFAIGLAA MGNRAIAEIQ FADYIFPAFD QIVNEAAKFR YRSGNEFNCG GLTIRSPYGA VGHGGHYHSQ SPEAFFCHVP GLKVVIPRSP
201: REAKGLLLAS IRDPNPVIFF EPKWLYRLSV EEVPEGDYML PLSQAEVIRK GSDITLIGWG AQLAVLEQAC EDASKVGISC ELIDLRTLIP WDKETVEASV
301: SKTGKLLISH EAPITGGFGA EIAASIAERC FQRLEAPVAR VCGLDTPFPL VYEPFYMPTK NKILDAIKAT VNY

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.