Factsheet for VIT_06s0004g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G55510.1	Thale cress	mitochondrion	82.96	84.38
KRH65916	Soybean	mitochondrion	84.08	84.08
KRH75712	Soybean	mitochondrion	83.52	83.99
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	29.33	83.33
Solyc01g028900.2.1	Tomato	plastid	82.68	82.68
AT3G13450.1	Thale cress	mitochondrion	79.89	79.89
GSMUA_Achr8P20340_001	Banana	mitochondrion	82.68	78.93
CDY10556	Canola	mitochondrion	79.33	78.45
Zm00001d007892_P001	Maize	mitochondrion	78.21	77.14
EER98039	Sorghum	mitochondrion	78.49	76.15
Os07t0170100-01	Rice	mitochondrion	77.65	75.14
TraesCS6A01G036000.1	Wheat	mitochondrion	77.65	75.14
TraesCS6D01G041600.1	Wheat	mitochondrion	78.21	75.07
HORVU6Hr1G006560.2	Barley	mitochondrion	77.93	75.0
CDY02436	Canola	mitochondrion	78.21	71.43
TraesCS6B01G050600.1	Wheat	mitochondrion	54.47	69.64
HORVU5Hr1G114960.1	Barley	cytosol	39.11	68.29
Bra030856.1-P	Field mustard	mitochondrion	72.07	68.07
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	24.02	54.78
HORVU6Hr1G037690.1	Barley	plastid	25.42	54.17
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	21.79	49.68
VIT_17s0000g00690.t01	Wine grape	mitochondrion	32.12	32.12
VIT_01s0146g00310.t01	Wine grape	mitochondrion	29.61	28.88
VIT_10s0003g03770.t01	Wine grape	plastid	30.73	28.13
VIT_04s0043g00720.t01	Wine grape	plastid	30.73	27.16
VIT_04s0008g02300.t01	Wine grape	mitochondrion	8.94	24.24

Protein Annotations

EntrezGene:100248427	wikigene:100248427	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	EMBL:AM449002
ProteinID:CAN61041	ProteinID:CAN61041.1	ProteinID:CBI16562	ProteinID:CBI16562.3	UniProt:D7SLN4	EMBL:FN594951
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	EntrezGene:LOC100248427
wikigene:LOC100248427	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI00015C80F9	ArrayExpress:VIT_06s0004g00190	EnsemblPlantsGene:VIT_06s0004g00190	EnsemblPlants:VIT_06s0004g00190.t01	unigene:Vvi.20926	RefSeq:XP_002285753
RefSeq:XP_002285753.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:318150..325122

Molecular Weight (calculated)

39160.2 Da

IEP (calculated)

6.849

GRAVY (calculated)

0.037

Length

358 amino acids

Sequence
(BLAST)

001: MAATGTMRRS FGSLAFSISK RAFSTSPSPV DANGLKSMNL FSAINHALQI ALESDPRAYV FGEDVSFGGV FRCTTGLADR FGKGRVFNTP LCEQGIVGFG
101: IGLAAMGNRA IAEIQFADYI YPAFDQIVNE AAKFRYRSGN QFNCGGLTIR APYGAVGHGG HYHSQSPESF FCHVPGIKVV IPRSPKQAKG LLLSCIRDPN
201: PIVFFEPKWL YRLAVEEVPE HDYMLPLSEA EVIRQGTDIT LVGWGAQLAV MEQACIDAEK EGISCELIDL RTLLPWDKET VEASVRKTGR LLVSHEAPVT
301: GGFGAEISAS MVERCFLRLE APVARVCGLD TPFPLVFEPF YMPTKNKILD AIKSTVNY

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.