CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	31.17	91.27
Zm00001d007892_P001	Maize	mitochondrion	85.91	87.33
Os07t0170100-01	Rice	mitochondrion	86.18	85.95
TraesCS6A01G036000.1	Wheat	mitochondrion	85.09	84.86
TraesCS6D01G041600.1	Wheat	mitochondrion	85.09	84.18
HORVU6Hr1G006560.2	Barley	mitochondrion	84.55	83.87
TraesCS6B01G050600.1	Wheat	mitochondrion	60.16	79.29
AT1G55510.1	Thale cress	mitochondrion	75.61	79.26
KRH75712	Soybean	mitochondrion	76.15	78.93
VIT_06s0004g00190.t01	Wine grape	mitochondrion	76.15	78.49
KRH65916	Soybean	mitochondrion	76.15	78.49
AT3G13450.1	Thale cress	mitochondrion	75.34	77.65
Solyc01g028900.2.1	Tomato	plastid	75.34	77.65
GSMUA_Achr8P20340_001	Banana	mitochondrion	76.42	75.2
CDY10556	Canola	mitochondrion	73.44	74.86
HORVU5Hr1G114960.1	Barley	cytosol	40.65	73.17
CDY02436	Canola	mitochondrion	71.82	67.6
Bra030856.1-P	Field mustard	mitochondrion	66.12	64.38
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	25.2	59.24
HORVU6Hr1G037690.1	Barley	plastid	26.29	57.74
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	22.49	52.87
EER97019	Sorghum	mitochondrion	32.52	32.0
KXG25507	Sorghum	mitochondrion	31.71	31.28
EER93752	Sorghum	plastid	29.81	28.42
EES16391	Sorghum	plastid	28.73	26.57

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	UniProt:C5XAC7	EnsemblPlants:EER98039	ProteinID:EER98039
ProteinID:EER98039.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861	EnsemblPlantsGene:SORBI_3002G046800
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0003C6659E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4369396..4374082

Molecular Weight (calculated)

39816.8 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.022

Length

369 amino acids

Sequence
(BLAST)

001: MAAAKALREV ARTRRGSWAA VVGRRCLSSG SGGPAAERKE GGGGGAKAVN LFTAVNQALH IALDTDPRAF VFGEDVGFGG VFRCTTGLAD RFGKNRVFNT
101: PLCEQGIAGF AIGLAAMGNR AIAEIQFADY IFPAFDQIVN EAAKFRYRSG NEFNCGGLTI RTPYGAVGHG GHYHSQSPEA FFCHVPGLKV VIPRSPREAK
201: GLLLASIRDP NPVVFFEPKW LYRLAVEEVP EEDYMLPLSE AEVIRKGSDI TLIGWGAQLA VLKEACEDAA KDGVSCELID LKTLIPWDKE TVEASVKKTG
301: KLLVSHEAPI TGGFGAEIAA SITERCFQRL EAPVARVCGL DTPFPLVYEP FYMPTKNKVL DAIKSTVNY

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.