CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65916	Soybean	mitochondrion	87.64	87.15
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	30.06	84.92
AT1G55510.1	Thale cress	mitochondrion	83.15	84.09
VIT_06s0004g00190.t01	Wine grape	mitochondrion	83.99	83.52
Solyc01g028900.2.1	Tomato	plastid	82.02	81.56
AT3G13450.1	Thale cress	mitochondrion	81.18	80.73
CDY10556	Canola	mitochondrion	79.49	78.18
Zm00001d007892_P001	Maize	mitochondrion	79.21	77.69
GSMUA_Achr8P20340_001	Banana	mitochondrion	81.18	77.07
TraesCS6A01G036000.1	Wheat	mitochondrion	79.49	76.49
Os07t0170100-01	Rice	mitochondrion	79.49	76.49
EER98039	Sorghum	mitochondrion	78.93	76.15
TraesCS6D01G041600.1	Wheat	mitochondrion	79.21	75.6
HORVU6Hr1G006560.2	Barley	mitochondrion	78.09	74.73
CDY02436	Canola	mitochondrion	78.09	70.92
TraesCS6B01G050600.1	Wheat	mitochondrion	55.34	70.36
Bra030856.1-P	Field mustard	mitochondrion	72.19	67.81
HORVU5Hr1G114960.1	Barley	cytosol	39.04	67.8
HORVU6Hr1G037690.1	Barley	plastid	26.4	55.95
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	24.16	54.78
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	21.35	48.41
KRH16935	Soybean	mitochondrion	30.34	30.0
KRH14338	Soybean	mitochondrion	30.06	29.72
KRH73802	Soybean	mitochondrion	29.78	29.44
KRH15497	Soybean	plastid	30.62	26.91
KRH05520	Soybean	plastid	30.34	26.8
KRH58644	Soybean	nucleus	30.06	26.42
KRH42550	Soybean	plastid	29.49	25.86

Protein Annotations

EntrezGene:100802853	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	EMBL:ACUP02000458	EMBL:BT096659
UniProt:C6TGA9	EnsemblPlantsGene:GLYMA_01G103100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
InterPro:IPR009014	EnsemblPlants:KRH75712	ProteinID:KRH75712	ProteinID:KRH75712.1	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001B16A2B	:	:

Description

hypothetical protein

Coordinates

chr1:-:34422008..34427984

Molecular Weight (calculated)

38932.8 Da

IEP (calculated)

5.988

GRAVY (calculated)

0.013

Length

356 amino acids

Sequence
(BLAST)

001: MSTKFGRLVP LVFSKRGFST STSIQKGGSE EGLKSLNLCS AINQALHIAL DTDPRSYVFG EDVSFGGVFR CTTGLADQFG KKRVFNTPLC EQGIVGFGIG
101: LAAMGNRAIA EIQFADYIFP AFDQIVNEAA KFRYRSGNQF NCGGLTVRAP YGAVGHGGHY HSQSPEAFFC HVPGIKVVIP RSPREAKGLL LSCVRDPNPI
201: VFFEPKWLYR LAVEEVPEDD YMLPLSEAEV IRQGSDITLV GWGAQLSIME QACLDAEKEG ISCELIDLKT LIPWDKETVE ASVNKTGRLL VSHEAPITGG
301: FGAEISASIV ERCFSRLEAP VARICGLDTP FPLVFEPFYM PSKNKILDAI KSTVNY

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.