CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G55510.1	Thale cress	mitochondrion	87.29	89.77
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	29.28	84.13
CDY02436	Canola	mitochondrion	89.5	82.65
KRH75712	Soybean	mitochondrion	78.18	79.49
VIT_06s0004g00190.t01	Wine grape	mitochondrion	78.45	79.33
KRH65916	Soybean	mitochondrion	77.9	78.77
Solyc01g028900.2.1	Tomato	plastid	77.35	78.21
Zm00001d007892_P001	Maize	mitochondrion	76.24	76.03
Os07t0170100-01	Rice	mitochondrion	75.97	74.32
TraesCS6A01G036000.1	Wheat	mitochondrion	75.14	73.51
TraesCS6D01G041600.1	Wheat	mitochondrion	75.69	73.46
EER98039	Sorghum	mitochondrion	74.86	73.44
HORVU6Hr1G006560.2	Barley	mitochondrion	75.41	73.39
GSMUA_Achr8P20340_001	Banana	mitochondrion	74.03	71.47
TraesCS6B01G050600.1	Wheat	mitochondrion	54.14	70.0
HORVU5Hr1G114960.1	Barley	cytosol	38.95	68.78
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	24.59	56.69
HORVU6Hr1G037690.1	Barley	plastid	25.41	54.76
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	21.82	50.32
CDY54117	Canola	cytosol	10.22	31.9
CDY05827	Canola	mitochondrion	31.49	31.32
CDX91560	Canola	mitochondrion	31.49	31.15
CDY16348	Canola	mitochondrion	31.22	30.87
CDX84881	Canola	mitochondrion	31.22	30.79
CDY45814	Canola	mitochondrion	31.22	30.79
CDX71636	Canola	mitochondrion	30.94	30.77
CDX90227	Canola	cytosol, mitochondrion, peroxisome	15.75	30.65
CDY51472	Canola	plastid	28.18	27.95
CDY63670	Canola	plastid	30.11	27.05
CDY26291	Canola	plastid	19.89	22.86
CDX90228	Canola	plastid	6.63	18.05
CDY54115	Canola	mitochondrion, peroxisome, plastid	2.21	13.11
CDY54116	Canola	cytosol	1.38	12.5

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	GO:A0A078FAZ1	UniProt:A0A078FAZ1	EnsemblPlants:CDY10556
ProteinID:CDY10556	ProteinID:CDY10556.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
EnsemblPlantsGene:GSBRNA2T00032516001	InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	UniParc:UPI0004EEF4EF	SEG:seg	:	:	:

Description

BnaC03g70580DBnaC03g70580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAZ1]

Coordinates

chrLK032004:-:331742..333995

Molecular Weight (calculated)

39487.5 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.014

Length

362 amino acids

Sequence
(BLAST)

001: MASLLSRFCR KLALPGSAHG SRMTSTTACG SETVKSLNLY SAINQALHIA LETDPRSYVF GEDVGFGGVF RCTTGLAERF GKNRVFNTPL CEQGIVGFGI
101: GLAAMGNRAV VEIQVADYIY PAFDQIVNEA AKFRYRSGNQ FNCGGLTIRA PYGAVGHGGH YHSQSPEAFF CHVPGIKVVI PRSPREAKGL LLSSIRDPNP
201: VVFFEPKWLY RQAVEEVPEH DYMIPLSQAE IIREGSDITL VGWGAQLTVM EQACLDAEKE GISCELIDLK TLLPWDKETV EASVKKTGRL LISHEAPITG
301: GFGAEISATI LERCFLKLEA PVSRVCGLDT PFPLVFEPFY MPTKNKASSS SSLSSPSKTH IF

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.