Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P12960_001 | Banana | vacuole | 67.21 | 66.13 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 80.33 | 18.77 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 44.26 | 14.52 |
| Zm00001d000227_P001 | Maize | cytosol | 75.41 | 14.42 |
| CDY63670 | Canola | plastid | 91.8 | 13.9 |
| AT2G34590.1 | Thale cress | plastid | 91.8 | 13.79 |
| Os03t0645100-01 | Rice | plastid | 73.77 | 13.76 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 86.89 | 13.55 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 81.97 | 13.48 |
| KRH58644 | Soybean | nucleus | 86.89 | 13.09 |
| KRH42550 | Soybean | plastid | 86.89 | 13.05 |
| KRH05520 | Soybean | plastid | 85.25 | 12.9 |
| KRH15497 | Soybean | plastid | 85.25 | 12.84 |
| Solyc08g016750.2.1 | Tomato | plastid | 83.61 | 12.5 |
| Solyc04g008590.2.1 | Tomato | plastid | 83.61 | 12.5 |
| Zm00001d033225_P002 | Maize | plastid | 77.05 | 12.27 |
| PGSC0003DMT400019358 | Potato | plastid | 83.61 | 12.23 |
| EER93752 | Sorghum | plastid | 75.41 | 11.89 |
| Os12t0616900-01 | Rice | plastid | 75.41 | 11.76 |
| TraesCS5A01G374500.1 | Wheat | plastid | 75.41 | 11.7 |
| TraesCS5D01G384100.1 | Wheat | golgi | 75.41 | 11.7 |
| PGSC0003DMT400080554 | Potato | plastid | 83.61 | 11.7 |
| EES16391 | Sorghum | plastid | 75.41 | 11.53 |
| TraesCS5B01G376400.1 | Wheat | plastid | 73.77 | 11.45 |
| TraesCS5A01G030800.1 | Wheat | plastid | 68.85 | 10.74 |
| TraesCS5B01G030400.1 | Wheat | plastid | 68.85 | 10.69 |
| HORVU0Hr1G009910.2 | Barley | plastid | 67.21 | 10.41 |
| TraesCS5D01G039000.1 | Wheat | plastid | 68.85 | 10.37 |
| HORVU5Hr1G092920.4 | Barley | plastid | 75.41 | 9.89 |
| CDY26291 | Canola | plastid | 44.26 | 8.57 |
| CDY51472 | Canola | plastid | 44.26 | 7.4 |
| CDY05827 | Canola | mitochondrion | 32.79 | 5.49 |
| CDX71636 | Canola | mitochondrion | 32.79 | 5.49 |
| CDY16348 | Canola | mitochondrion | 32.79 | 5.46 |
| CDX91560 | Canola | mitochondrion | 32.79 | 5.46 |
| CDY45814 | Canola | mitochondrion | 32.79 | 5.45 |
| CDX84881 | Canola | mitochondrion | 32.79 | 5.45 |
| CDY02436 | Canola | mitochondrion | 14.75 | 2.3 |
| CDY10556 | Canola | mitochondrion | 13.11 | 2.21 |
| CDY54117 | Canola | cytosol | 0.0 | 0.0 |
| CDY54116 | Canola | cytosol | 0.0 | 0.0 |
| CDX90228 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY54115 | EnsemblPlantsGene:GSBRNA2T00013396001 | Gene3D:3.40.50.920 | GO:A0A078ISM6 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:IPR009014 | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase_C | PANTHER:PTHR11624 |
| PANTHER:PTHR11624:SF95 | PFAM:PF02780 | ProteinID:CDY54115 | ProteinID:CDY54115.1 | SUPFAM:SSF52922 | UniParc:UPI0004EEAC2E |
| UniProt:A0A078ISM6 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g53940DPyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078ISM6]
Coordinates
chrLK033279:-:66454..66639
Molecular Weight (calculated)
6500.8 Da
IEP (calculated)
3.760
GRAVY (calculated)
0.243
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MRTGGIGASL TAAINEKFLD YLDAPVMCLS SQEVPTPYAG TLEEWTVVQP AQIATAVEQL C
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.