Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G030400.1 | Wheat | plastid | 94.07 | 96.95 |
| HORVU0Hr1G009910.2 | Barley | plastid | 92.84 | 95.43 |
| Zm00001d000227_P001 | Maize | cytosol | 73.33 | 93.1 |
| TraesCS5A01G030800.1 | Wheat | plastid | 88.15 | 91.3 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 40.99 | 89.25 |
| Bra032361.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 64.94 | 85.67 |
| EES16391 | Sorghum | plastid | 79.75 | 80.95 |
| Os12t0616900-01 | Rice | plastid | 77.53 | 80.31 |
| TraesCS5D01G384100.1 | Wheat | golgi | 76.3 | 78.63 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 69.88 | 72.38 |
| KRH15497 | Soybean | plastid | 71.11 | 71.11 |
| KRH05520 | Soybean | plastid | 70.62 | 70.97 |
| KRH58644 | Soybean | nucleus | 70.62 | 70.62 |
| KRH42550 | Soybean | plastid | 70.62 | 70.44 |
| Bra010796.1-P | Field mustard | plastid | 69.88 | 70.22 |
| Solyc04g008590.2.1 | Tomato | plastid | 70.62 | 70.1 |
| Solyc08g016750.2.1 | Tomato | plastid | 70.62 | 70.1 |
| CDY63670 | Canola | plastid | 69.63 | 69.98 |
| AT2G34590.1 | Thale cress | plastid | 70.12 | 69.95 |
| VIT_04s0043g00720.t01 | Wine grape | plastid | 69.63 | 69.63 |
| CDY51472 | Canola | plastid | 62.72 | 69.59 |
| AT1G30120.1 | Thale cress | plastid | 69.38 | 69.21 |
| CDY54115 | Canola | mitochondrion, peroxisome, plastid | 10.37 | 68.85 |
| PGSC0003DMT400019358 | Potato | plastid | 70.62 | 68.59 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 44.2 | 68.58 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 62.72 | 68.46 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 10.12 | 66.13 |
| PGSC0003DMT400080554 | Potato | plastid | 69.63 | 64.68 |
| CDY26291 | Canola | plastid | 48.89 | 62.86 |
| CDY54117 | Canola | cytosol | 17.78 | 62.07 |
| CDY54116 | Canola | cytosol | 3.95 | 40.0 |
| TraesCS7D01G263900.2 | Wheat | mitochondrion | 33.58 | 37.16 |
| TraesCS5D01G299000.1 | Wheat | mitochondrion | 34.07 | 36.7 |
| CDX90228 | Canola | plastid | 11.85 | 36.09 |
| TraesCS6D01G041600.1 | Wheat | mitochondrion | 26.91 | 29.22 |
Protein Annotations
| Gene3D:3.40.50.920 | Gene3D:3.40.50.970 | MapMan:5.1.2.2.1.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:IPR009014 | PFAM:PF02779 | PFAM:PF02780 | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF93 |
| SMART:SM00861 | SUPFAM:SSF52518 | SUPFAM:SSF52922 | InterPro:THDP-binding | EnsemblPlantsGene:TraesCS5D01G039000 | EnsemblPlants:TraesCS5D01G039000.1 |
| InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd | InterPro:Transketolase_C | TIGR:cd07036 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:40091742..40094279
Molecular Weight (calculated)
43525.8 Da
IEP (calculated)
6.402
GRAVY (calculated)
0.032
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAPSPQAT AAAAALSRHR SAAVPPVPRS ARVAAAARRP GSTRARGGLV ARAVVAAKGE VASSDTGGES TMVSVSSITR CHEVLMFEAL REAMIEEMTL
101: DPTVCMIGED VGDYGGSYKV SKGLSEMFGD LRVLDTPIAE NSFTGMGIGA AMKGLRPVVE GMNMGFLLLA YNQISNNCGM LPYTSGGQFK IPIVIRGPGG
201: VGRQLGAEHS QRLESYFQSI PGIQMVACST PYNAKGLLKA AIRSDNPVVL FEHVLLYNLK EKIPDEEYIC CLEEAEMVRP GSQLTILTYS RMRYHVMQAV
301: KTLVNKGYDP EVIDIRSLKP FDLHTIGNSI KKTHRVLIVE ECMRTGGIGA SLRSAIIDNF WDELDARPVC LSSQDVPTPY AATLEDATVV QPAQIVAAVE
401: EICQS
101: DPTVCMIGED VGDYGGSYKV SKGLSEMFGD LRVLDTPIAE NSFTGMGIGA AMKGLRPVVE GMNMGFLLLA YNQISNNCGM LPYTSGGQFK IPIVIRGPGG
201: VGRQLGAEHS QRLESYFQSI PGIQMVACST PYNAKGLLKA AIRSDNPVVL FEHVLLYNLK EKIPDEEYIC CLEEAEMVRP GSQLTILTYS RMRYHVMQAV
301: KTLVNKGYDP EVIDIRSLKP FDLHTIGNSI KKTHRVLIVE ECMRTGGIGA SLRSAIIDNF WDELDARPVC LSSQDVPTPY AATLEDATVV QPAQIVAAVE
401: EICQS
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.