Factsheet for Bra010796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001814.1-P
Bra018126.1-P
Bra022254.1-P
Bra023902.1-P
Bra031254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Bra022254.1-P	AT3G17860.1	21798944
AT1G30120.1	Bra001814.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra023902.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra031254.1-P	AT3G21140.1	21798944
AT1G30120.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	75.93	99.67
CDX90227	Canola	cytosol, mitochondrion, peroxisome	45.91	99.46
Zm00001d000227_P001	Maize	cytosol	70.97	89.66
Os03t0645100-01	Rice	plastid	70.72	87.16
AT1G30120.1	Thale cress	plastid	81.89	81.28
VIT_10s0003g03770.t01	Wine grape	plastid	78.66	81.07
KRH42550	Soybean	plastid	79.16	78.57
Solyc04g008590.2.1	Tomato	plastid	78.66	77.7
KRH05520	Soybean	plastid	77.17	77.17
KRH15497	Soybean	plastid	77.42	77.04
Solyc08g016750.2.1	Tomato	plastid	77.92	76.96
KRH58644	Soybean	nucleus	77.17	76.79
Zm00001d033225_P002	Maize	plastid	72.7	76.5
EER93752	Sorghum	plastid	72.95	75.97
TraesCS5D01G384100.1	Wheat	golgi	73.95	75.83
TraesCS5A01G374500.1	Wheat	plastid	73.95	75.83
TraesCS5B01G376400.1	Wheat	plastid	73.7	75.57
PGSC0003DMT400019358	Potato	plastid	78.16	75.54
Os12t0616900-01	Rice	plastid	73.2	75.45
EES16391	Sorghum	plastid	74.69	75.44
GSMUA_Achr5P02560_001	Banana	plastid	67.74	73.58
TraesCS5A01G030800.1	Wheat	plastid	70.22	72.38
TraesCS5B01G030400.1	Wheat	plastid	70.47	72.26
CDX90228	Canola	plastid	23.82	72.18
PGSC0003DMT400080554	Potato	plastid	77.67	71.79
HORVU0Hr1G009910.2	Barley	plastid	69.48	71.07
GSMUA_Achr2P12960_001	Banana	vacuole	10.92	70.97
GSMUA_Achr4P31470_001	Banana	mitochondrion	45.41	70.11
TraesCS5D01G039000.1	Wheat	plastid	70.22	69.88
HORVU5Hr1G092920.4	Barley	plastid	72.7	63.01
Bra026451.1-P	Field mustard	mitochondrion	32.51	37.97
Bra022757.1-P	Field mustard	mitochondrion	33.99	37.33
Bra022529.1-P	Field mustard	mitochondrion	33.5	36.89
Bra035715.1-P	Field mustard	mitochondrion	33.5	29.8
Bra030856.1-P	Field mustard	mitochondrion	27.54	29.29

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EnsemblPlantsGene:Bra010796	EnsemblPlants:Bra010796.1	EnsemblPlants:Bra010796.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014
UniProt:M4D2U3	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI00025470CA	SEG:seg	:	:	:	:

Description

AT1G30120 (E=9e-196) PDH-E1 BETA | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring)

Coordinates

chrA08:+:16479666..16481712

Molecular Weight (calculated)

43621.7 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.072

Length

403 amino acids

Sequence
(BLAST)

001: MAARIHGGAA TALSTFNPKK LVAPSRTNLP AAARSSKRCI VAGGGSDASK KSLSVRHSQK LIANAAVATK AETSATTGTG HELLLFEALQ EGLEEEMDRD
101: PHVCVMGEDV GHYGGSYKVT KGLADKFGDL RVLDTPICEN AFTGMGIGAA MTGLRPVIEG MNMGFLLLAF NQISNNCGML HYTSGGQFTI PVVIRGPGGV
201: GRQLGAEHSQ RLESYFQSIP GIQMVACSTP YNAKGLMKAA IRSENPVILF EHVLLYNLKE KIPDEEYICN LEEAEMVRPG EHITILTYSR MRYHVMQAAK
301: TLVNKGYDPE VIDIRSLKPF DLYTIGNSVK KTHRVLIVEE CMRTGGIGAS LTAAINENFH DYLDAPVMCL SSQDVPTPYA GTLEEWTVVQ PAQIVTAVEQ
401: LCQ

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.