CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH39044
KRH42544
KRH44611
KRH47293
KRH54542
KRH56919
KRH58636
KRH63357
KRH69557
KRH74610

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	KRH42544	AT1G14920.1	21798944
AT1G30120.1	KRH58636	AT1G14920.1	21798944
AT1G30120.1	KRH69557	AT1G70340.1	21798944
AT1G30120.1	KRH74610	AT1G70340.1	21798944
AT1G30120.1	KRH39044	AT3G17860.1	21798944
AT1G30120.1	KRH44611	AT3G21140.1	21798944
AT1G30120.1	KRH47293	AT3G21140.1	21798944
AT1G30120.1	KRH03466	AT3G47620.1	21798944
AT1G30120.1	KRH54542	AT3G47620.1	21798944
AT1G30120.1	KRH56919	AT3G47620.1	21798944
AT1G30120.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.92	95.16
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	71.46	93.81
Zm00001d000227_P001	Maize	cytosol	70.97	89.66
Os03t0645100-01	Rice	plastid	72.21	88.99
CDY54115	Canola	mitochondrion, peroxisome, plastid	12.9	85.25
KRH58644	Soybean	nucleus	85.36	84.94
KRH15497	Soybean	plastid	85.11	84.69
KRH42550	Soybean	plastid	82.63	82.02
VIT_10s0003g03770.t01	Wine grape	plastid	78.41	80.82
VIT_04s0043g00720.t01	Wine grape	plastid	79.16	78.77
Solyc04g008590.2.1	Tomato	plastid	79.65	78.68
AT1G30120.1	Thale cress	plastid	78.66	78.08
Solyc08g016750.2.1	Tomato	plastid	78.91	77.94
EER93752	Sorghum	plastid	74.69	77.78
Zm00001d033225_P002	Maize	plastid	73.7	77.55
CDY63670	Canola	plastid	77.42	77.42
TraesCS5A01G374500.1	Wheat	plastid	75.43	77.35
TraesCS5D01G384100.1	Wheat	golgi	75.43	77.35
Bra010796.1-P	Field mustard	plastid	77.17	77.17
TraesCS5B01G376400.1	Wheat	plastid	75.19	77.1
AT2G34590.1	Thale cress	plastid	77.67	77.09
PGSC0003DMT400019358	Potato	plastid	79.16	76.5
EES16391	Sorghum	plastid	75.43	76.19
Os12t0616900-01	Rice	plastid	73.7	75.96
CDY51472	Canola	plastid	68.73	75.89
GSMUA_Achr5P02560_001	Banana	plastid	69.23	75.2
TraesCS5A01G030800.1	Wheat	plastid	71.22	73.4
TraesCS5B01G030400.1	Wheat	plastid	70.97	72.77
HORVU0Hr1G009910.2	Barley	plastid	70.97	72.59
PGSC0003DMT400080554	Potato	plastid	78.16	72.25
GSMUA_Achr4P31470_001	Banana	mitochondrion	46.15	71.26
GSMUA_Achr2P12960_001	Banana	vacuole	10.92	70.97
CDY54117	Canola	cytosol	20.35	70.69
TraesCS5D01G039000.1	Wheat	plastid	70.97	70.62
CDY26291	Canola	plastid	54.59	69.84
HORVU5Hr1G092920.4	Barley	plastid	74.94	64.95
CDX90228	Canola	plastid	14.89	45.11
CDY54116	Canola	cytosol	4.47	45.0
KRH14338	Soybean	mitochondrion	35.98	40.28
KRH73802	Soybean	mitochondrion	35.73	40.0
KRH16935	Soybean	mitochondrion	35.24	39.44
KRH65916	Soybean	mitochondrion	27.79	31.28
KRH75712	Soybean	mitochondrion	26.8	30.34

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	UniProt:A0A0R0FHC7	EMBL:ACUP02010746	EnsemblPlantsGene:GLYMA_17G231400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014
EnsemblPlants:KRH05520	ProteinID:KRH05520	ProteinID:KRH05520.1	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0002081A4A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:38635393..38639136

Molecular Weight (calculated)

43820.0 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.027

Length

403 amino acids

Sequence
(BLAST)

001: MAATLFQGLG VVTPSFSSSH SNKFMLSSLS ERKDGIFVVR SDADARILKT GARKHELLVT NAVATKGASS AASTSKSGSG HELLLFEALR EGLEEEMERD
101: PCVCVMGEDV GHYGGSYKVT KGLAPKFGDL RVLDTPIAEN AFMGMGIGAA MTGLRPVVEG MNMGFLLLAF NQISNNCGML HYTSGGQFKI PIVIRGPGGV
201: GRQLGAEHSQ RLESYFQSIP GIQMVACSTP YNAKGLMKAA IRSENPVILF EHVLLYNLKE RIPDEEYVLS LEEAEMVRPG EHVTILTYSR MRYHVMQAAK
301: TLVNKGYDPE VIDIRSLKPF DLHTIGNSVK KTHRVLIVEE CMRTGGIGAS LTAAITENFH DHLDAPIVCL SSQDVPTPYA GTLEEWTVVQ PAQIVTAVEQ
401: LCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.