Factsheet for PGSC0003DMT400019358

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400036790
PGSC0003DMT400068172
PGSC0003DMT400068174
PGSC0003DMT400074101
PGSC0003DMT400079598

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	PGSC0003DMT400079598	AT1G70340.1	21798944
AT1G30120.1	PGSC0003DMT400036790	AT3G17860.1	21798944
AT1G30120.1	PGSC0003DMT400074101	AT3G17860.1	21798944
AT1G30120.1	PGSC0003DMT400068172	AT3G21140.1	21798944
AT1G30120.1	PGSC0003DMT400068174	AT3G21140.1	21798944
AT1G30120.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g016750.2.1	Tomato	plastid	96.88	99.02
CDX90227	Canola	cytosol, mitochondrion, peroxisome	42.21	94.62
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	69.3	94.14
Zm00001d000227_P001	Maize	cytosol	68.35	89.34
Os03t0645100-01	Rice	plastid	69.06	88.07
CDY54115	Canola	mitochondrion, peroxisome, plastid	12.23	83.61
KRH58644	Soybean	nucleus	79.62	81.98
AT2G34590.1	Thale cress	plastid	78.9	81.03
VIT_04s0043g00720.t01	Wine grape	plastid	78.66	80.99
KRH42550	Soybean	plastid	77.46	79.56
KRH15497	Soybean	plastid	76.98	79.26
KRH05520	Soybean	plastid	76.5	79.16
CDY63670	Canola	plastid	76.5	79.16
CDY51472	Canola	plastid	68.59	78.36
Bra010796.1-P	Field mustard	plastid	75.54	78.16
GSMUA_Achr5P02560_001	Banana	plastid	69.3	77.9
AT1G30120.1	Thale cress	plastid	75.3	77.34
Zm00001d033225_P002	Maize	plastid	70.98	77.28
EER93752	Sorghum	plastid	71.46	77.0
TraesCS5D01G384100.1	Wheat	golgi	71.7	76.08
TraesCS5A01G374500.1	Wheat	plastid	71.46	75.83
TraesCS5B01G376400.1	Wheat	plastid	71.22	75.57
EES16391	Sorghum	plastid	72.18	75.44
Os12t0616900-01	Rice	plastid	70.26	74.94
PGSC0003DMT400080554	Potato	plastid	77.22	73.85
TraesCS5A01G030800.1	Wheat	plastid	68.82	73.4
TraesCS5B01G030400.1	Wheat	plastid	68.82	73.03
HORVU0Hr1G009910.2	Barley	plastid	68.82	72.84
CDY54117	Canola	cytosol	20.14	72.41
GSMUA_Achr4P31470_001	Banana	mitochondrion	44.84	71.65
TraesCS5D01G039000.1	Wheat	plastid	68.59	70.62
GSMUA_Achr2P12960_001	Banana	vacuole	10.31	69.35
CDY26291	Canola	plastid	51.8	68.57
HORVU5Hr1G092920.4	Barley	plastid	72.18	64.73
CDX90228	Canola	plastid	15.35	48.12
CDY54116	Canola	cytosol	4.32	45.0
PGSC0003DMT400011072	Potato	mitochondrion	34.53	39.02
PGSC0003DMT400065364	Potato	mitochondrion	33.81	37.9
PGSC0003DMT400069263	Potato	mitochondrion	33.81	36.72

Protein Annotations

EntrezGene:102604284	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	UniProt:M1ABY7	PFAM:PF02779	PFAM:PF02780
EnsemblPlantsGene:PGSC0003DMG400007488	PGSC:PGSC0003DMG400007488	EnsemblPlants:PGSC0003DMT400019358	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI000296BF46	SEG:seg	:	:	:	:

Description

Pyruvate dehydrogenase E1 beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400007488]

Coordinates

chr8:-:11589919..11597831

Molecular Weight (calculated)

45375.7 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.119

Length

417 amino acids

Sequence
(BLAST)

001: MAAIIQGIGA ATALTSANSL DTKKSLFANS RRSLSERKGR LFVVRSDGRL SCGLNGRGGR AEQLITNAVA AKEDAAAAST SSKPGDALES WSSRHELLLF
101: EALREGLEEE MDRDPTVCVM GEDVGHYGGS YKVTKGLAPK YGDLRVLDTP IAENSFTGMG IGAAMTGLRP VIEGMNMGFL LLAFNQISNN CGMLHYTSGG
201: QFKIPVVIRG PGGVGRQLGA EHSQRLESYF QSIPGIQMVA CSTPYNAKGL MKAAIRSDNP VILFEHVLLY NLKERIPDEE YVLNLEEAEM VRPGEHVTIL
301: TYSRMRYHVM QAAKTLVNKG YDPEVIDIRS LKPFDLYTIG KSVKKTHRVL IVEECMRTGG IGASLTAAIT ENFHDYLDAP IVCLSSQDVP TPYAGTLENW
401: TVVQPPQIVT AVEQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.