Factsheet for Os12t0616900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 17189339
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0108800-01
Os02t0148400-01
Os02t0747400-01
Os03t0707600-01
Os06t0226700-01
Os08t0428400-01
Os08t0517500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Os03t0707600-01	AT1G14920.1	21798944
AT1G30120.1	Os01t0108800-01	AT1G70340.1	21798944
AT1G30120.1	Os08t0428400-01	AT3G17860.1	21798944
AT1G30120.1	Os02t0148400-01	AT3G21140.1	21798944
AT1G30120.1	Os08t0517500-01	AT3G21140.1	21798944
AT1G30120.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G30120.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000227_P001	Maize	cytosol	79.8	97.81
Os03t0645100-01	Rice	plastid	81.33	97.25
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.99	92.47
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	69.82	88.93
EES16391	Sorghum	plastid	85.93	84.21
TraesCS5A01G030800.1	Wheat	plastid	79.8	79.8
HORVU0Hr1G009910.2	Barley	plastid	80.05	79.44
TraesCS5B01G030400.1	Wheat	plastid	79.8	79.39
TraesCS5D01G039000.1	Wheat	plastid	80.31	77.53
VIT_10s0003g03770.t01	Wine grape	plastid	75.96	75.96
CDY54115	Canola	mitochondrion, peroxisome, plastid	11.76	75.41
KRH42550	Soybean	plastid	76.98	74.14
CDY63670	Canola	plastid	76.21	73.95
KRH05520	Soybean	plastid	75.96	73.7
KRH58644	Soybean	nucleus	75.96	73.33
GSMUA_Achr5P02560_001	Banana	plastid	69.57	73.32
Bra010796.1-P	Field mustard	plastid	75.45	73.2
KRH15497	Soybean	plastid	75.7	73.09
VIT_04s0043g00720.t01	Wine grape	plastid	75.7	73.09
AT1G30120.1	Thale cress	plastid	75.7	72.91
AT2G34590.1	Thale cress	plastid	75.45	72.66
CDY51472	Canola	plastid	67.77	72.6
GSMUA_Achr2P12960_001	Banana	vacuole	11.51	72.58
Solyc04g008590.2.1	Tomato	plastid	75.19	72.06
Solyc08g016750.2.1	Tomato	plastid	74.68	71.57
GSMUA_Achr4P31470_001	Banana	mitochondrion	47.31	70.88
PGSC0003DMT400019358	Potato	plastid	74.94	70.26
PGSC0003DMT400080554	Potato	plastid	75.96	68.12
CDY54117	Canola	cytosol	19.18	64.66
CDY26291	Canola	plastid	51.41	63.81
CDY54116	Canola	cytosol	4.6	45.0
CDX90228	Canola	plastid	13.55	39.85
Os09t0509200-01	Rice	mitochondrion	36.83	38.3
Os08t0536000-01	Rice	mitochondrion	36.32	37.97
Os07t0170100-01	Rice	mitochondrion	30.43	32.16
Os09t0509300-01	Rice	plasma membrane	13.3	8.29

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:4352803	MapMan:5.1.2.2.1.2	ProteinID:ABA99864.1	EMBL:AK063753
EMBL:AK101464	ProteinID:BAF30304.1	ProteinID:BAT18104.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014
EnsemblPlantsGene:Os12g0616900	EnsemblPlants:Os12t0616900-01	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF93
UniProt:Q2QM55	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0000680C1B	RefSeq:XP_015620613.1	SEG:seg	:

Description

Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment). (Os12t0616900-01)

Coordinates

chr12:+:26200242..26203412

Molecular Weight (calculated)

42123.0 Da

IEP (calculated)

6.841

GRAVY (calculated)

0.031

Length

391 amino acids

Sequence
(BLAST)

001: MATAAAASLQ YALHGAASAS AKPRSAAPGR SVRVVAARRS VRARGGAVVA RAAVTASADA TAESKSGGHE VLLFEALREA LIEEMKEDPT VCVFGEDVGH
101: YGGSYKVTKG LAEMFGDLRV LDTPIAENSF AGMGVGAAMK GLRPIVEGMN MGFLLLAYNQ ISNNCGMLHY TSGGQFKIPI VIRGPGGVGR QLGAEHSQRL
201: ESYFQSIPGL QMVACSTPYN AKGLMKAAIR SENPVVLFEH VLLYNLKEKI PDEEYICCLE EAEMVRPGEH VTILTYSRMR YHVMQAAKTL VNKGYDPEVI
301: DIRSLKPFDL HTIGNSIKKT HRVLIVEECM RTGGIGASLR SAIIDNFWDY LDAPIMCLSS QDVPTPYAAT LEDATVVQPA QIVAAVEQIC Q

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.