Factsheet for Os09t0509200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 17383966

mitochondrion: 16429260
mitochondrion: 19010998
mitochondrion: 23027867
plastid: 27992503

gfp PMID: 17383966 doi

KA Howell, K Cheng, MW Murcha, LE Jenkin, AH Millar, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0739600-01
Os02t0739700-01
Os06t0246500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Os02t0739600-01	AT1G59900.1	21798944
AT5G50850.1	Os02t0739700-01	AT1G59900.1	21798944
AT5G50850.1	Os06t0246500-01	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0536000-01	Rice	mitochondrion	92.82	93.32
EER97019	Sorghum	mitochondrion	90.96	91.2
Zm00001d006107_P001	Maize	mitochondrion	90.43	90.91
TraesCS5A01G291500.1	Wheat	golgi	89.36	89.36
TraesCS5B01G290600.1	Wheat	mitochondrion	88.83	88.83
TraesCS5D01G299000.1	Wheat	mitochondrion	88.83	88.83
KRH73802	Soybean	mitochondrion	83.78	87.5
KRH16935	Soybean	mitochondrion	83.78	87.5
KRH14338	Soybean	mitochondrion	82.98	86.67
VIT_01s0146g00310.t01	Wine grape	mitochondrion	82.71	84.74
AT5G50850.1	Thale cress	mitochondrion	80.59	83.47
Bra026451.1-P	Field mustard	mitochondrion	76.06	82.9
CDY45814	Canola	mitochondrion	80.85	82.83
CDX84881	Canola	mitochondrion	80.85	82.83
CDY16348	Canola	mitochondrion	80.59	82.79
CDX91560	Canola	mitochondrion	80.32	82.51
Solyc03g097680.2.1	Tomato	plastid	80.85	82.38
PGSC0003DMT400011072	Potato	mitochondrion	80.85	82.38
CDX71636	Canola	mitochondrion	79.52	82.14
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.19	82.12
Bra022757.1-P	Field mustard	mitochondrion	80.05	82.02
Bra022529.1-P	Field mustard	mitochondrion	79.52	81.69
Solyc06g072580.2.1	Tomato	nucleus	79.52	81.47
CDY05827	Canola	mitochondrion	78.46	81.04
Zm00001d021070_P002	Maize	mitochondrion	85.9	78.59
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.95	77.88
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.11	77.29
PGSC0003DMT400069263	Potato	mitochondrion	78.46	76.82
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	87.77	76.57
Bra035715.1-P	Field mustard	mitochondrion	76.33	63.36
Os03t0645100-01	Rice	plastid	36.97	42.51
Os12t0616900-01	Rice	plastid	38.3	36.83
Os07t0170100-01	Rice	mitochondrion	31.12	31.62
Os09t0509300-01	Rice	plasma membrane	13.83	8.29

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EntrezGene:4347531	EMBL:AK069525	ProteinID:BAF25541.1	ProteinID:BAT08892.1	ProteinID:EEE70023.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EnsemblPlantsGene:Os09g0509200	EnsemblPlants:Os09t0509200-01	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	UniProt:Q0J0H4	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0000DD9802	RefSeq:XP_015612322.1	SEG:seg	:	:	:

Description

Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1). (Os09t0509200-01);Similar to (Rice Genome Annotation Project) pyruvate dehydrogenase E1 component subunit beta. (Os09t0509200-02)

Coordinates

chr9:+:19752711..19758949

Molecular Weight (calculated)

40253.4 Da

IEP (calculated)

5.146

GRAVY (calculated)

0.040

Length

376 amino acids

Sequence
(BLAST)

001: MLGAARRQLG SGPMLGQVLR RLRPATAAAA DAARAYSAAA KEMTVREALN SALDEEMSAD PSVFLMGEEV GEYQGAYKIS KGLLDKYGPE RVLDTPITEA
101: GFTGIAVGAA YQGLRPVVEF MTFNFSMQAI DHIINSAAKS NYMSAGQISV PIVFRGPNGA AAGVGAQHSQ CYAAWYAHVP GLKVLVPYSA EDARGLLKAA
201: IRDPDPVVFL ENELLYGESF PISAEVLDSS FALPIGKAKI EREGKDVTIT AYSKMVGYAL QAADILSKEG ISAEVINLRS IRPLDRATIN ASVRKTNRLV
301: TIEESFPQHG IGAEICMSVV EESFEYLDAP VERIAGADVP MPYAANLERM AVPQVDDIVR AAKRACYRAV PMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.