CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95283
KRG99219
KRH45768
KRH69435
KRH74712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	KRG95283	AT1G59900.1	21798944
AT5G50850.1	KRG99219	AT1G59900.1	21798944
AT5G50850.1	KRH45768	AT1G59900.1	21798944
AT5G50850.1	KRH69435	AT1G59900.1	21798944
AT5G50850.1	KRH74712	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73802	Soybean	mitochondrion	95.56	95.56
KRH14338	Soybean	mitochondrion	95.28	95.28
VIT_01s0146g00310.t01	Wine grape	mitochondrion	87.78	86.1
Os08t0536000-01	Rice	mitochondrion	88.06	84.76
PGSC0003DMT400011072	Potato	mitochondrion	86.39	84.28
EER97019	Sorghum	mitochondrion	87.78	84.27
KXG25507	Sorghum	mitochondrion	87.5	84.22
Zm00001d006107_P001	Maize	mitochondrion	87.5	84.22
TraesCS7B01G161100.1	Wheat	mitochondrion	86.11	84.01
TraesCS7D01G263900.2	Wheat	mitochondrion	85.28	83.88
HORVU7Hr1G055090.3	Barley	mitochondrion	86.11	83.78
Os09t0509200-01	Rice	mitochondrion	87.5	83.78
Solyc03g097680.2.1	Tomato	plastid	85.83	83.74
TraesCS7A01G263300.1	Wheat	plastid	85.83	83.74
TraesCS5B01G290600.1	Wheat	mitochondrion	86.94	83.24
TraesCS5A01G291500.1	Wheat	golgi	86.67	82.98
TraesCS5D01G299000.1	Wheat	mitochondrion	86.39	82.71
Solyc06g072580.2.1	Tomato	nucleus	84.17	82.56
AT5G50850.1	Thale cress	mitochondrion	82.22	81.54
CDX84881	Canola	mitochondrion	82.78	81.2
CDX71636	Canola	mitochondrion	81.94	81.04
CDY16348	Canola	mitochondrion	82.22	80.87
CDX91560	Canola	mitochondrion	82.22	80.87
CDY05827	Canola	mitochondrion	81.67	80.77
CDY45814	Canola	mitochondrion	82.22	80.65
Bra026451.1-P	Field mustard	mitochondrion	76.94	80.29
Bra022757.1-P	Field mustard	mitochondrion	81.39	79.84
Bra022529.1-P	Field mustard	mitochondrion	81.11	79.78
Zm00001d031659_P001	Maize	mitochondrion	87.5	79.35
PGSC0003DMT400069263	Potato	mitochondrion	83.06	77.86
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	46.39	76.96
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	87.22	75.85
Zm00001d021070_P002	Maize	mitochondrion	85.56	74.94
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	85.56	71.46
Bra035715.1-P	Field mustard	mitochondrion	79.17	62.91
KRH58644	Soybean	nucleus	39.72	35.31
KRH05520	Soybean	plastid	39.44	35.24
KRH15497	Soybean	plastid	39.44	35.06
KRH42550	Soybean	plastid	39.17	34.73
KRH75712	Soybean	mitochondrion	30.0	30.34
KRH65916	Soybean	mitochondrion	30.0	30.17

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100817577	MapMan:2.2.1.1.2	Gene3D:3.40.50.920
Gene3D:3.40.50.970	EMBL:ACUP02009033	EMBL:BT093620	UniProt:C6T827	EnsemblPlantsGene:GLYMA_14G186900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	ProteinID:KRH16933.1	ProteinID:KRH16934.1	EnsemblPlants:KRH16935
ProteinID:KRH16935	ProteinID:KRH16935.1	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001B15E48	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:45148872..45153968

Molecular Weight (calculated)

38626.3 Da

IEP (calculated)

5.762

GRAVY (calculated)

0.020

Length

360 amino acids

Sequence
(BLAST)

001: MLGVIRHKSI RPAFSAIRHF SSAAKEITVR DALNSALDEE MSADPKVFLM GEEVGEYQGA YKISKGLLDK YGPERVLDTP ITEAGFAGIG VGAAYYGLRP
101: VVEFMTFNFS MQAIDHIINS AAKSNYMSAG QISVPIVFRG PNGAAAGVGA QHSQCYASLY GSCPGLKVLS PYSSEDARGL LKAAIRDPDP VVFLENELLY
201: GESFPVSAEV LDSSFCLPIG KAKIEREGKD VTITAYSKMV GYALKAAETL AKEGISAEVI NLRSIRPLDR STINASVRKT NRLVTVEEGF PQHGVGAEIC
301: TSVIEESFGY LDAPVERIAG ADVPMPYAAN LERMAVPQVE DIVRAAKRAC YRSVPLAASA

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.