Factsheet for TraesCS5A01G291500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	TraesCS6A01G311800.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6B01G342000.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6D01G291100.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7A01G238900.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7B01G103800.2	AT1G59900.1	21798944
AT5G50850.1	TraesCS7D01G199900.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G290600.1	Wheat	mitochondrion	99.47	99.47
TraesCS5D01G299000.1	Wheat	mitochondrion	99.47	99.47
Zm00001d006107_P001	Maize	mitochondrion	93.09	93.58
EER97019	Sorghum	mitochondrion	92.82	93.07
TraesCS7A01G263300.1	Wheat	plastid	87.77	89.43
Os09t0509200-01	Rice	mitochondrion	89.36	89.36
KRH16935	Soybean	mitochondrion	82.98	86.67
KRH73802	Soybean	mitochondrion	82.45	86.11
KRH14338	Soybean	mitochondrion	81.65	85.28
Solyc03g097680.2.1	Tomato	plastid	82.71	84.28
AT5G50850.1	Thale cress	mitochondrion	81.12	84.02
PGSC0003DMT400011072	Potato	mitochondrion	82.45	84.01
VIT_01s0146g00310.t01	Wine grape	mitochondrion	81.65	83.65
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	95.74	83.53
Solyc06g072580.2.1	Tomato	nucleus	81.38	83.38
CDX84881	Canola	mitochondrion	81.12	83.11
CDX71636	Canola	mitochondrion	80.32	82.97
CDY16348	Canola	mitochondrion	80.59	82.79
CDY45814	Canola	mitochondrion	80.59	82.56
CDX91560	Canola	mitochondrion	80.32	82.51
Bra026451.1-P	Field mustard	mitochondrion	75.53	82.32
CDY05827	Canola	mitochondrion	79.52	82.14
Bra022529.1-P	Field mustard	mitochondrion	79.79	81.97
VIT_17s0000g00690.t01	Wine grape	mitochondrion	77.93	81.84
Bra022757.1-P	Field mustard	mitochondrion	79.79	81.74
Zm00001d021070_P002	Maize	mitochondrion	88.03	80.54
PGSC0003DMT400069263	Potato	mitochondrion	80.59	78.91
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.41	76.96
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	84.04	76.33
Bra035715.1-P	Field mustard	mitochondrion	77.66	64.46
TraesCS5A01G374500.1	Wheat	plastid	38.56	36.9
TraesCS5A01G030800.1	Wheat	plastid	36.7	35.29
TraesCS6A01G036000.1	Wheat	mitochondrion	33.24	33.78

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
EnsemblPlantsGene:TraesCS5A01G291500	EnsemblPlants:TraesCS5A01G291500.1	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	TIGR:cd07036
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:502289734..502297070

Molecular Weight (calculated)

40272.3 Da

IEP (calculated)

5.032

GRAVY (calculated)

0.018

Length

376 amino acids

Sequence
(BLAST)

001: MLGAARRQLG SGPMLGQVLR RLRPAAAAST EAARGYSSAA KEITVRDALN SALDEEMSAD PSVFLMGEEV GEYQGAYKIT KGLLDKYGPD RVLDTPITEA
101: GFTGIGVGAA YQGLRPVIEF MTFNFSMQAI DHIINSAAKS NYMSAGQINV PIVFRGPNGA AAGVGAQHSQ CYAAWFAHVP GLKVLAPYSS EDARGLLKAA
201: IRDPDPVVFL ENELLYGESF PVSDEVLDSS FALPIGKAKI EREGKDVTIT AFSKMVGYAL QAAEILSKEG ISAEVINLRS IRPLDRAAIN ASVRKTNRLV
301: TLEEGFPQHG VGAEICMSVV EESFEYLDAP IERIAGADVP MPYAANLERL AVPQIEDIVR AARRACYRAL PMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.