Factsheet for TraesCS6A01G311800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G291100.1	Wheat	mitochondrion	99.73	95.36
TraesCS6B01G342000.1	Wheat	mitochondrion	99.73	95.36
HORVU6Hr1G076810.1	Barley	plastid	99.46	91.34
Os02t0739600-01	Rice	mitochondrion	92.99	88.46
EES05555	Sorghum	mitochondrion	90.57	86.15
Zm00001d017985_P001	Maize	mitochondrion	90.3	85.9
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	74.39	85.19
Zm00001d052289_P001	Maize	mitochondrion	89.49	85.13
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	66.04	84.19
CDY31596	Canola	mitochondrion	15.09	83.58
CDY70124	Canola	cytosol	32.08	82.07
TraesCS7A01G238900.1	Wheat	mitochondrion	84.64	80.31
CDY24500	Canola	mitochondrion	83.29	79.43
Bra035416.1-P	Field mustard	mitochondrion	83.29	79.43
CDY33613	Canola	mitochondrion	83.02	79.18
Solyc05g006520.2.1	Tomato	plastid	83.29	79.03
PGSC0003DMT400058223	Potato	mitochondrion	83.29	79.03
KRH69435	Soybean	mitochondrion	83.83	78.54
AT1G59900.1	Thale cress	mitochondrion	82.21	78.41
KRH45768	Soybean	mitochondrion	82.48	77.67
CDY16236	Canola	mitochondrion	80.86	77.52
CDY11622	Canola	mitochondrion	81.4	77.04
CDY38784	Canola	mitochondrion	81.4	77.04
Bra024643.1-P	Field mustard	mitochondrion	80.32	77.0
PGSC0003DMT400004851	Potato	mitochondrion	80.05	76.55
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	80.59	76.47
KRH74712	Soybean	mitochondrion	75.2	76.23
KRG99219	Soybean	mitochondrion	70.62	76.16
AT1G24180.1	Thale cress	mitochondrion	80.59	76.08
CDY28458	Canola	mitochondrion	80.05	75.19
CDY40292	Canola	mitochondrion	79.78	74.94
Bra012418.1-P	Field mustard	mitochondrion	79.78	74.75
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	80.05	74.62
Bra016238.1-P	Field mustard	mitochondrion	80.32	74.5
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	79.78	74.37
CDY55062	Canola	cytosol	35.04	69.15
Bra017890.1-P	Field mustard	cytosol	16.17	66.67
CDY14675	Canola	cytosol	75.74	63.86
KRG95283	Soybean	cytosol, mitochondrion, plastid	26.95	60.98
CDY55064	Canola	plasma membrane	53.64	60.67
TraesCS2A01G010100.1	Wheat	plastid	38.54	33.97
TraesCS5A01G120000.3	Wheat	mitochondrion	26.68	21.11
Os02t0739700-01	Rice	plastid	1.35	1.13

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016624
GO:GO:0043231	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518
InterPro:THDP-binding	TIGRFAMs:TIGR03182	EnsemblPlantsGene:TraesCS6A01G311800	EnsemblPlants:TraesCS6A01G311800.1	TIGR:cd02000	:

Description

No Description!

Coordinates

chr6A:+:547826517..547830294

Molecular Weight (calculated)

40754.8 Da

IEP (calculated)

7.308

GRAVY (calculated)

-0.249

Length

371 amino acids

Sequence
(BLAST)

001: MAATRAISDS TAPLTIETSM PFTAHIVDPP SRDVATTPAE LVAFFHDMSL MRRMEIAADS LYKAKLIRGF CHLYDGQEAV CAGMEAAITR KDSIITAYRD
101: HCIFLSRGGD LVTAFAELMG RQVGCSRGKG GSMHFYKKDA NFYGGHGIVG AQVPLGCGLA FAQKYRKEDT VSFSLYGDGA ANQGQLFEAL NISALWKLPA
201: ILVCENNHYG MGTAEWRAAK SPSYYKRGDY VPGLKVDGMD VLAVKQACKF AKEHAIANGP IVLEMDTYRY HGHSMSDPGS TYRTRDEISG VRQERDPIER
301: VRKLLLAHDL ATPAELKDME KEIRKEVDAA IAKAKESPMP DASELFTNVY VKGFGVESFG ADRKELRATL P

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.