CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	mitochondrion

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014833_P001	Maize	cytosol, golgi	18.29	66.67
KRG95283	Soybean	cytosol, mitochondrion, plastid	32.62	65.24
CDY33613	Canola	mitochondrion	76.52	64.52
CDY24500	Canola	mitochondrion	76.22	64.27
AT1G59900.1	Thale cress	mitochondrion	74.09	62.47
KRG99219	Soybean	mitochondrion	62.8	59.88
CDY38784	Canola	mitochondrion	67.38	56.38
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	23.48	56.2
CDY11622	Canola	mitochondrion	66.46	55.61
KRH69435	Soybean	mitochondrion	66.46	55.05
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	53.35	54.01
TraesCS6A01G311800.1	Wheat	golgi	60.67	53.64
TraesCS7B01G103800.2	Wheat	mitochondrion	59.15	53.59
Solyc05g006520.2.1	Tomato	plastid	63.72	53.45
PGSC0003DMT400058223	Potato	mitochondrion	63.72	53.45
CDY16236	Canola	mitochondrion	62.8	53.23
TraesCS6D01G291100.1	Wheat	mitochondrion	62.2	52.58
TraesCS6B01G342000.1	Wheat	mitochondrion	62.2	52.58
CDY28458	Canola	mitochondrion	63.11	52.41
CDY40292	Canola	mitochondrion	63.11	52.41
PGSC0003DMT400004851	Potato	mitochondrion	61.89	52.32
KRH45768	Soybean	mitochondrion	62.8	52.28
KRH74712	Soybean	mitochondrion	57.93	51.91
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	62.8	51.76
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	61.59	51.66
Os02t0739600-01	Rice	mitochondrion	60.98	51.28
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	45.43	51.2
HORVU6Hr1G076810.1	Barley	plastid	62.8	50.99
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	61.59	50.75
EES05555	Sorghum	mitochondrion	60.06	50.51
Zm00001d017985_P001	Maize	mitochondrion	60.06	50.51
Zm00001d052289_P001	Maize	mitochondrion	59.76	50.26
TraesCS7D01G199900.1	Wheat	golgi	59.45	49.49
TraesCS7A01G238900.1	Wheat	mitochondrion	58.84	49.36
EER88157	Sorghum	mitochondrion	58.84	48.86
Zm00001d044748_P002	Maize	mitochondrion	57.62	48.21
Os06t0246500-01	Rice	plastid	57.62	47.49
CDY31596	Canola	mitochondrion	8.84	43.28
CDY37427	Canola	cytosol, mitochondrion, plastid	19.21	40.91
CDY14675	Canola	cytosol	54.57	40.68
HORVU7Hr1G040460.4	Barley	mitochondrion	62.2	40.56
CDY37473	Canola	plastid	28.05	21.75
CDY32445	Canola	plastid	28.05	21.65
CDY15202	Canola	plastid	28.05	21.45
CDX90009	Canola	plastid	27.74	21.36
Solyc04g025710.1.1	Tomato	cytosol	6.4	19.44
CDY50237	Canola	mitochondrion	19.21	13.35
CDY65512	Canola	mitochondrion	19.21	13.35
CDX96593	Canola	mitochondrion	18.6	12.95
CDY55062	Canola	cytosol	7.32	12.77
CDX78354	Canola	plastid	17.99	12.5
CDY65109	Canola	mitochondrion	17.99	12.47
CDX81122	Canola	plastid	17.68	12.42
CDY70124	Canola	cytosol	3.96	8.97
CDY37428	Canola	cytosol	1.83	4.08
Os02t0739700-01	Rice	plastid	3.66	2.72

Protein Annotations

EnsemblPlants:CDY55064	EnsemblPlantsGene:GSBRNA2T00015022001	Gene3D:3.40.50.970	GO:A0A078J089	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	PFAM:PF00676	ProteinID:CDY55064	ProteinID:CDY55064.1	SUPFAM:SSF52518
UniParc:UPI0004EDC173	UniProt:A0A078J089	MapMan:2.2.1.1.1	:	:	:

Description

BnaCnng28170DBnaCnng28170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J089]

Coordinates

chrLK033374:-:26399..28216

Molecular Weight (calculated)

36209.7 Da

IEP (calculated)

7.850

GRAVY (calculated)

-0.030

Length

328 amino acids

Sequence
(BLAST)

001: MVMPQSEFDH AEKEGALYGK VMVHESVEFL LVQKPVSVAF GRFAVKIKGG DMALSRLTSR SNGISRPLST AFGRFISTDT TPITIETSLP FTAHLCDPPS
101: RSVESSTQEL LDFFRTMALM RRMEIAADSL YKAKLIRGFC HLYDGQEAVA IGMEAVITKK DAIITAYRDH CIFLGRGGSL YEVFAELMGR QDGCSKGKGG
201: SMHFYKKDSS FYGGHGIVGA QVPLGCGIAF AQKYVKEEAV TFAMYGDGAA NQGQLFEALN ISALWDLPSI LVCENNHYGM GTAEWRAAKS PSYYKRGDYV
301: PGLKENSRFL QALSFLLWEP KFALLIYV

Best Arabidopsis Sequence Match ( AT1G24180.1 )
(BLAST)

001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP

Arabidopsis Description

IAR4Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Y0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.