CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016423.1-P	Field mustard	mitochondrion	99.15	99.15
CDY65109	Canola	mitochondrion	95.97	95.56
CDY65512	Canola	mitochondrion	87.26	87.08
CDY50237	Canola	mitochondrion	87.26	87.08
Solyc06g059850.1.1	Tomato	cytosol	55.2	68.42
KRH64579	Soybean	endoplasmic reticulum	64.76	63.81
VIT_18s0001g14980.t01	Wine grape	plastid	63.48	63.48
KRH53343	Soybean	mitochondrion	65.39	63.24
CDX81122	Canola	plastid	62.63	63.17
CDX78354	Canola	plastid	63.27	63.14
Solyc06g059840.2.1	Tomato	mitochondrion	59.45	61.4
PGSC0003DMT400063962	Potato	mitochondrion, plastid	61.15	61.15
PGSC0003DMT400033905	Potato	mitochondrion	59.02	60.96
GSMUA_Achr3P18980_001	Banana	mitochondrion	59.02	60.43
Solyc04g063350.2.1	Tomato	mitochondrion	60.3	60.17
TraesCS4B01G071500.1	Wheat	mitochondrion	59.45	60.09
TraesCS5B01G121400.3	Wheat	mitochondrion	59.66	59.91
TraesCS5D01G126700.1	Wheat	mitochondrion	59.45	59.7
TraesCS5A01G120000.3	Wheat	mitochondrion	59.24	59.49
HORVU5Hr1G034820.3	Barley	mitochondrion	59.02	59.28
Os12t0183100-01	Rice	mitochondrion	61.15	59.26
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	33.76	58.24
Zm00001d023694_P001	Maize	mitochondrion	59.87	57.79
AT5G34780.1	Thale cress	cytosol, mitochondrion	44.16	56.99
Solyc12g055890.1.1	Tomato	mitochondrion	35.24	55.89
KXG23145	Sorghum	mitochondrion	59.66	55.53
Solyc12g055880.1.1	Tomato	cytosol	15.71	54.81
CDY31596	Canola	mitochondrion	4.67	32.84
CDY70124	Canola	cytosol	9.98	32.41
CDY55062	Canola	cytosol	10.62	26.6
CDY33613	Canola	mitochondrion	21.66	26.22
CDY38784	Canola	mitochondrion	21.44	25.77
CDY24500	Canola	mitochondrion	21.23	25.71
CDY11622	Canola	mitochondrion	21.23	25.51
CDY28458	Canola	mitochondrion	20.59	24.56
CDY40292	Canola	mitochondrion	20.38	24.3
CDY16236	Canola	mitochondrion	19.53	23.77
CDY37427	Canola	cytosol, mitochondrion, plastid	7.43	22.73
CDY37473	Canola	plastid	19.11	21.28
CDY32445	Canola	plastid	19.11	21.18
CDY37428	Canola	cytosol	6.58	21.09
CDX90009	Canola	plastid	18.9	20.89
CDY15202	Canola	plastid	18.9	20.75
CDY14675	Canola	cytosol	18.9	20.23
CDY55064	Canola	plasma membrane	12.95	18.6

Protein Annotations

EnsemblPlants:CDX96593	EnsemblPlantsGene:GSBRNA2T00102791001	Gene3D:3.40.50.970	GO:A0A078EB60	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	InterPro:DH_E1	InterPro:THDP-binding	PANTHER:PTHR43380
PANTHER:PTHR43380:SF2	PFAM:PF00676	ProteinID:CDX96593	ProteinID:CDX96593.1	SUPFAM:SSF52518	UniParc:UPI0004EE9CF9
MapMan:4.2.7.2.1.1	:	:	:	:	:

Description

BnaA08g21360D

Coordinates

chrLK031895:-:170009..173464

Molecular Weight (calculated)

53232.9 Da

IEP (calculated)

6.744

GRAVY (calculated)

-0.460

Length

471 amino acids

Sequence
(BLAST)

001: MAIWFSRSRN IVFSLRHNLN LSGILIKRDY SPRPAFTNSQ LSSKSVCLDS FTSLRHESTA VEKQLDLVQQ SDEEDPQELN FPGGKIGYTS EMKFIPESSS
101: LRVPCYRVLD EDGRIISNSD YIPVSEKLAV RMYEHMATLQ VMDHIFYEAQ RQGRISFFIT AVGEEAINIA SAAALSPDDV VLPQYREPGV LLWRGFTLQE
201: FANQCFGNKA DRGKGRQMPV HYGSNRHNHF TVSSPIATQL PQAAGVGYSL KMEKKNACAV TFIGDGGTSE GDFHAGLNFA AVLEAPVVFI CRNNGWAIST
301: HISEQFRSDG IVVKGQAYGI RSIRVDGNDA LAVYSAVRSA REMAVKEQRP VLIEAMTYRV GHHSTSDDST KYRAADEIQY WKMSRNPVNR FRKWVEDNGW
401: WSEEDESKIR SNARKQILQA IQAAEKWDKP PLTELFSDVY DVKPKNLEEQ ELGLKELVEK RPQDYPPGFQ I

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.