CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71636
CDX84881
CDX91560
CDY05827
CDY16348
CDY45814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	CDX71636	AT5G50850.1	21798944
AT1G01090.1	CDX84881	AT5G50850.1	21798944
AT1G01090.1	CDX91560	AT5G50850.1	21798944
AT1G01090.1	CDY05827	AT5G50850.1	21798944
AT1G01090.1	CDY16348	AT5G50850.1	21798944
AT1G01090.1	CDY45814	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033286.1-P	Field mustard	plastid	99.77	99.77
CDY15202	Canola	plastid	99.06	98.37
CDY37427	Canola	cytosol, mitochondrion, plastid	35.45	98.05
CDY37428	Canola	cytosol	33.57	97.28
CDY37473	Canola	plastid	96.24	96.93
CDY32445	Canola	plastid	96.01	96.24
AT1G01090.1	Thale cress	plastid	93.19	92.76
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.3	92.23
PGSC0003DMT400035288	Potato	plastid	82.16	80.09
VIT_15s0048g02580.t01	Wine grape	plastid	80.52	79.21
KRH68960	Soybean	plastid	77.0	78.47
KRH47800	Soybean	plastid	79.11	78.01
KRH06359	Soybean	nucleus	79.11	78.01
KRG97240	Soybean	plastid	77.46	77.28
Solyc12g009410.1.1	Tomato	plastid	79.11	76.59
PGSC0003DMT400007571	Potato	plastid	78.87	76.36
Solyc12g009400.1.1	Tomato	plastid	78.64	76.14
TraesCS2D01G010700.1	Wheat	golgi	74.88	75.95
TraesCS2B01G012500.1	Wheat	plastid	74.65	75.53
TraesCS2A01G010100.1	Wheat	plastid	74.41	75.3
Os04t0119400-01	Rice	plastid	73.71	73.88
Zm00001d004473_P001	Maize	plastid	73.71	73.36
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	49.06	73.33
EES10385	Sorghum	plastid	73.94	73.09
GSMUA_Achr11P...	Banana	plastid	73.0	72.33
HORVU2Hr1G001600.1	Barley	plastid	73.94	68.93
CDY24500	Canola	mitochondrion	32.39	35.48
CDY38784	Canola	mitochondrion	32.63	35.46
CDY33613	Canola	mitochondrion	32.16	35.22
CDY11622	Canola	mitochondrion	32.39	35.2
CDY70124	Canola	cytosol	11.97	35.17
CDY16236	Canola	mitochondrion	31.92	35.14
CDY40292	Canola	mitochondrion	31.92	34.43
CDY28458	Canola	mitochondrion	31.92	34.43
CDY31596	Canola	mitochondrion	5.16	32.84
CDY55062	Canola	cytosol	14.32	32.45
GSMUA_Achr5P18750_001	Banana	plastid	68.08	32.15
CDY14675	Canola	cytosol	31.69	30.68
CDY55064	Canola	plasma membrane	21.36	27.74
CDX78354	Canola	plastid	22.07	19.92
CDX81122	Canola	plastid	21.83	19.91
CDY50237	Canola	mitochondrion	21.13	19.07
CDY65512	Canola	mitochondrion	21.13	19.07
CDX96593	Canola	mitochondrion	20.89	18.9
CDY65109	Canola	mitochondrion	20.66	18.6

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	GO:A0A078DNC6
EnsemblPlants:CDX90009	ProteinID:CDX90009	ProteinID:CDX90009.1	ncoils:Coil	InterPro:DH_E1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016624	GO:GO:0043231
EnsemblPlantsGene:GSBRNA2T00150508001	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518
InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0004EE2B4F	SEG:seg	:	:

Description

BnaA10g00730D

Coordinates

chrLK031861:-:1241683..1243451

Molecular Weight (calculated)

46935.3 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.257

Length

426 amino acids

Sequence
(BLAST)

001: MATSFSATLP LHGSQENRLL LPPIRLAPPP SSFLGSTRSL TIPSSRRLYH AHAARRSPVV GVQEVVKEKK VTNSLLITKE EGLVLYEDMI LGRSFEDMCA
101: QMYYRGKMFG FVHLYNGQEA VSTGFIKLLT QSDSVVSTYR DHVHALSKGV SARAVMSELF GKVTGCCRGQ GGSMHMFSKE HNMLGGFAFI GEGIPVATGA
201: AFTSKYKREV LKQDCDDVTV AFFGDGTCNN GQFYECLNMA ALYKLPIIFV VENNLWAIGM SHLRSTSDPE IWKKGPAFGM PGVHVDGMDV LKVREVAKEA
301: VTRARRGEGP TLVECETYRF RGHSLADPDE LRDAAEKAKY AARDPITALK KYLVENKLAN EGELKTIEKK IDELVEEAVE FADASPQPGR SQLLENVFAD
401: PKGFGIGPDG RYRCEDPKFT EGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.