Factsheet for PGSC0003DMT400007571

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011072
PGSC0003DMT400069263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	PGSC0003DMT400011072	AT5G50850.1	21798944
AT1G01090.1	PGSC0003DMT400069263	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009410.1.1	Tomato	plastid	98.86	98.86
Solyc12g009400.1.1	Tomato	plastid	97.5	97.5
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.05	94.17
CDY37427	Canola	cytosol, mitochondrion, plastid	31.36	89.61
CDY37428	Canola	cytosol	29.09	87.07
PGSC0003DMT400035288	Potato	plastid	84.55	85.13
KRH68960	Soybean	plastid	77.27	81.34
VIT_15s0048g02580.t01	Wine grape	plastid	78.86	80.14
KRG97240	Soybean	plastid	77.5	79.86
CDY37473	Canola	plastid	76.59	79.67
AT1G01090.1	Thale cress	plastid	77.27	79.44
Bra032619.1-P	Field mustard	plastid	76.59	79.29
CDY32445	Canola	plastid	76.59	79.29
KRH47800	Soybean	plastid	77.73	79.17
Bra033286.1-P	Field mustard	plastid	76.36	78.87
CDX90009	Canola	plastid	76.36	78.87
KRH06359	Soybean	nucleus	77.27	78.7
CDY15202	Canola	plastid	75.91	77.86
TraesCS2D01G010700.1	Wheat	golgi	71.82	75.24
GSMUA_Achr11P...	Banana	plastid	73.41	75.12
TraesCS2A01G010100.1	Wheat	plastid	71.36	74.58
TraesCS2B01G012500.1	Wheat	plastid	71.14	74.35
Os04t0119400-01	Rice	plastid	70.68	73.18
Zm00001d004473_P001	Maize	plastid	71.14	73.13
EES10385	Sorghum	plastid	71.14	72.62
HORVU2Hr1G001600.1	Barley	plastid	70.91	68.27
PGSC0003DMT400058223	Potato	mitochondrion	32.05	36.06
PGSC0003DMT400004851	Potato	mitochondrion	31.14	35.31
GSMUA_Achr5P18750_001	Banana	plastid	66.36	32.37
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	14.09	22.71
PGSC0003DMT400063962	Potato	mitochondrion, plastid	23.64	22.08
PGSC0003DMT400033905	Potato	mitochondrion	21.14	20.39
PGSC0003DMT400060275	Potato	mitochondrion	21.59	20.34

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:102601242	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1
ncoils:Coil	InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:M0ZT74
PFAM:PF00676	EnsemblPlantsGene:PGSC0003DMG400002921	PGSC:PGSC0003DMG400002921	EnsemblPlants:PGSC0003DMT400007571	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25
InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI000295AFC2	RefSeq:XP_006345233.1
SEG:seg	:	:	:	:	:

Description

Pyruvate dehydrogenase E1 alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400002921]

Coordinates

chr12:-:3007881..3011198

Molecular Weight (calculated)

48779.1 Da

IEP (calculated)

7.119

GRAVY (calculated)

-0.367

Length

440 amino acids

Sequence
(BLAST)

001: MAASASSFAA NKFLQPINST RSIDNNNKKT LLGNQLKDSS FFLGSAKKLY MKKSFSSQNS KSRSNGVFAV SEVVKDKKLN TDSSLSNLLI TKDEGLELYE
101: DMVLGRAFED MCAQMYYRGK MFGFVHLYNG QEAVSTGFIR LLKKEDSVVS TYRDHVHALS KGVPARQVMS ELFGKTTGCC RGQGGSMHMF SKEHNVLGGF
201: AFIGEGIPVA TGAAFTSKYR REVMKEADCD HVTMAFFGDG TCNNGQFFEC LNMAALWKLP IIFVVENNLW AIGMSHLRST SDPEIWKKGP AFGMPGVHVD
301: GMDVLKVREV AKEAVARARR GDGPTLVECE TYRFRGHSLA DPDELRDPAE KNHYAARDPI SALKKYMFEN NLASEAELKA IDKKIDELVE EAVEFADESP
401: HPVRSQLLEN VFADPKGFGI GPDGRYRCED PKFTEGTAHV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.