Factsheet for Zm00001d004473_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006107_P001
Zm00001d021070_P002
Zm00001d031659_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	Zm00001d006107_P001	AT5G50850.1	21798944
AT1G01090.1	Zm00001d021070_P002	AT5G50850.1	21798944
AT1G01090.1	Zm00001d031659_P001	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10385	Sorghum	plastid	96.96	96.29
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.9	95.15
Os04t0119400-01	Rice	plastid	90.65	91.29
TraesCS2A01G010100.1	Wheat	plastid	89.49	90.97
TraesCS2B01G012500.1	Wheat	plastid	89.25	90.74
TraesCS2D01G010700.1	Wheat	golgi	88.78	90.48
CDY37428	Canola	cytosol	29.67	86.39
CDY37427	Canola	cytosol, mitochondrion, plastid	30.14	83.77
HORVU2Hr1G001600.1	Barley	plastid	84.35	78.99
GSMUA_Achr11P...	Banana	plastid	78.74	78.37
KRH68960	Soybean	plastid	74.3	76.08
VIT_15s0048g02580.t01	Wine grape	plastid	76.4	75.52
KRG97240	Soybean	plastid	74.3	74.47
CDY37473	Canola	plastid	73.6	74.47
KRH47800	Soybean	plastid	74.77	74.07
Bra032619.1-P	Field mustard	plastid	73.36	73.88
CDY32445	Canola	plastid	73.36	73.88
CDX90009	Canola	plastid	73.36	73.71
Bra033286.1-P	Field mustard	plastid	73.36	73.71
KRH06359	Soybean	nucleus	74.3	73.61
AT1G01090.1	Thale cress	plastid	73.6	73.6
CDY15202	Canola	plastid	73.36	73.19
PGSC0003DMT400035288	Potato	plastid	74.3	72.77
Solyc12g009400.1.1	Tomato	plastid	73.36	71.36
Solyc12g009410.1.1	Tomato	plastid	73.36	71.36
PGSC0003DMT400007571	Potato	plastid	73.13	71.14
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	46.26	69.47
Zm00001d014833_P001	Maize	cytosol, golgi	9.11	43.33
Zm00001d044748_P002	Maize	mitochondrion	34.11	37.24
Zm00001d017985_P001	Maize	mitochondrion	33.64	36.92
Zm00001d052289_P001	Maize	mitochondrion	33.18	36.41
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	11.45	35.77
GSMUA_Achr5P18750_001	Banana	plastid	72.43	34.37
Zm00001d023694_P001	Maize	mitochondrion	24.53	21.52

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100272834	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1
UniProt:A0A1D6EFN9	ncoils:Coil	InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006086	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	ProteinID:ONM18996.1
PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding
TIGRFAMs:TIGR03182	UniParc:UPI0001BA9CF1	EnsemblPlantsGene:Zm00001d004473	EnsemblPlants:Zm00001d004473_P001	EnsemblPlants:Zm00001d004473_T001	SEG:seg

Description

Pyruvate dehydrogenase E1 component subunit alpha-3 chloroplastic

Coordinates

chr2:-:114085506..114089423

Molecular Weight (calculated)

46406.4 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.193

Length

428 amino acids

Sequence
(BLAST)

001: MAAASFTAAK FLAPVAARSG GERAPPLPAG ASSSSFARTL RRGAVHHPRL RTALAVSSDL LAGNKAAQAA AAHPAVTREE ALELYEDMVL GRVFEDMCAQ
101: MYYRGKMFGF VHLYNGQEAV STGFIKLLNQ ADCVVSTYRD HVHALSKGVP ARSVMAELFG KATGCCRGQG GSMHMFSAPH NLLGGFAFIG EGIPVATGAA
201: FAAKYRHEVL KESGPDGLDV TLAFFGDGTC NNGQFFECLN MAQLWKLPIV FVVENNLWAI GMSHIRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAIERARRGE GPTLVECETY RFRGHSLADP DELRKPDEKT HYAARDSITA LKKYIIEQNL ATESELKSIE KKIDDVVEEA VEFADASPHP PRSQLLENVF
401: ADPKGFGIGP DGKYRCEDPK FTQGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.