Factsheet for TraesCS2A01G010100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16481623
plastid: 16595579
plastid: 18419817
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G291500.1
TraesCS5B01G290600.1
TraesCS5D01G299000.1
TraesCS7A01G263300.1
TraesCS7B01G161100.1
TraesCS7D01G263900.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	TraesCS5A01G291500.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS5B01G290600.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS5D01G299000.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7A01G263300.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7B01G161100.1	AT5G50850.1	21798944
AT1G01090.1	TraesCS7D01G263900.2	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	24.47	100.0
TraesCS2B01G012500.1	Wheat	plastid	98.1	98.1
TraesCS2D01G010700.1	Wheat	golgi	97.39	97.62
Os04t0119400-01	Rice	plastid	90.97	90.12
Zm00001d004473_P001	Maize	plastid	90.97	89.49
EES10385	Sorghum	plastid	89.55	87.47
CDY37428	Canola	cytosol	30.17	86.39
HORVU2Hr1G001600.1	Barley	plastid	92.4	85.12
CDY37427	Canola	cytosol, mitochondrion, plastid	31.12	85.06
GSMUA_Achr11P...	Banana	plastid	79.1	77.44
VIT_15s0048g02580.t01	Wine grape	plastid	77.43	75.29
CDY37473	Canola	plastid	75.06	74.7
KRH68960	Soybean	plastid	74.11	74.64
Bra033286.1-P	Field mustard	plastid	75.3	74.41
CDX90009	Canola	plastid	75.3	74.41
Bra032619.1-P	Field mustard	plastid	75.06	74.35
CDY32445	Canola	plastid	75.06	74.35
CDY15202	Canola	plastid	75.53	74.13
AT1G01090.1	Thale cress	plastid	75.3	74.07
KRH47800	Soybean	plastid	75.3	73.38
KRH06359	Soybean	nucleus	75.3	73.38
KRG97240	Soybean	plastid	74.11	73.07
PGSC0003DMT400035288	Potato	plastid	75.3	72.54
Solyc12g009400.1.1	Tomato	plastid	74.82	71.59
Solyc12g009410.1.1	Tomato	plastid	74.82	71.59
PGSC0003DMT400007571	Potato	plastid	74.58	71.36
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	47.03	69.47
TraesCS6A01G311800.1	Wheat	golgi	33.97	38.54
TraesCS7A01G238900.1	Wheat	mitochondrion	33.73	36.32
GSMUA_Achr5P18750_001	Banana	plastid	73.16	34.15
TraesCS5A01G120000.3	Wheat	mitochondrion	21.85	19.62

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016624	GO:GO:0043231	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	EnsemblPlantsGene:TraesCS2A01G010100	EnsemblPlants:TraesCS2A01G010100.1	TIGR:cd02000
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:3959490..3962611

Molecular Weight (calculated)

45896.9 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.228

Length

421 amino acids

Sequence
(BLAST)

001: MAAASFTAAK FLAPVAARSG GDRARPSPAP SAFAVRPLRR GPARRLGSVM AVSSDVLKAA PAAAAYPAVT REEALELYED MILGRNFEDM CAQMYYRGKM
101: FGFVHLYNGQ EAVSTGFIKQ LNQPDCVVST YRDHVHALSK GVPARAVMAE LFGKATGCCR GQGGSMHMFS EPHNLLGGFA FIGEGIPVAT GAAFAAKYRH
201: EVLKQSSPDG LDVTLAFFGD GTCNNGQFFE CLNMAQLWKL PIIFVVENNL WAIGMSHLRS TSDPEIWKKG PAFGMPGVHV DGMDVLKVRE VAKEAIDRAR
301: RGEGPTLVEC ETYRFRGHSL ADPDELRRPD EKSHYAARDP ITSLKKYIIE QNLASEAELK SIEKKIDDVV EEAVEFADAS PLPPRSQLLE NVFADPKGFG
401: IGPDGKYRCE DPKFTQGTAQ V

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.