CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71636
CDX84881
CDX91560
CDY05827
CDY16348
CDY45814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01090.1	CDX71636	AT5G50850.1	21798944
AT1G01090.1	CDX84881	AT5G50850.1	21798944
AT1G01090.1	CDX91560	AT5G50850.1	21798944
AT1G01090.1	CDY05827	AT5G50850.1	21798944
AT1G01090.1	CDY16348	AT5G50850.1	21798944
AT1G01090.1	CDY45814	AT5G50850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90009	Canola	plastid	98.37	99.06
Bra033286.1-P	Field mustard	plastid	98.14	98.83
CDY37427	Canola	cytosol, mitochondrion, plastid	34.97	97.4
CDY37473	Canola	plastid	94.64	95.98
CDY37428	Canola	cytosol	32.87	95.92
CDY32445	Canola	plastid	94.64	95.53
HORVU2Hr1G086290.1	Barley	extracellular, vacuole	22.14	92.23
AT1G01090.1	Thale cress	plastid	91.84	92.06
PGSC0003DMT400035288	Potato	plastid	80.65	79.18
VIT_15s0048g02580.t01	Wine grape	plastid	79.49	78.75
KRH68960	Soybean	plastid	76.46	78.47
KRH06359	Soybean	nucleus	78.09	77.55
KRH47800	Soybean	plastid	77.62	77.08
KRG97240	Soybean	plastid	76.46	76.81
Solyc12g009410.1.1	Tomato	plastid	78.09	76.14
TraesCS2D01G010700.1	Wheat	golgi	74.36	75.95
PGSC0003DMT400007571	Potato	plastid	77.86	75.91
TraesCS2B01G012500.1	Wheat	plastid	74.36	75.77
Solyc12g009400.1.1	Tomato	plastid	77.62	75.68
TraesCS2A01G010100.1	Wheat	plastid	74.13	75.53
Os04t0119400-01	Rice	plastid	73.19	73.88
Zm00001d004473_P001	Maize	plastid	73.19	73.36
EES10385	Sorghum	plastid	73.43	73.09
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	48.25	72.63
GSMUA_Achr11P...	Banana	plastid	72.26	72.09
HORVU2Hr1G001600.1	Barley	plastid	73.89	69.37
CDY24500	Canola	mitochondrion	32.4	35.73
CDY38784	Canola	mitochondrion	32.63	35.71
CDY33613	Canola	mitochondrion	32.17	35.48
CDY11622	Canola	mitochondrion	32.4	35.46
CDY16236	Canola	mitochondrion	31.93	35.4
CDY70124	Canola	cytosol	11.89	35.17
CDY40292	Canola	mitochondrion	31.93	34.68
CDY28458	Canola	mitochondrion	31.93	34.68
CDY31596	Canola	mitochondrion	5.13	32.84
CDY55062	Canola	cytosol	14.22	32.45
GSMUA_Achr5P18750_001	Banana	plastid	67.83	32.26
CDY14675	Canola	cytosol	31.7	30.91
CDY55064	Canola	plasma membrane	21.45	28.05
CDX78354	Canola	plastid	21.91	19.92
CDX81122	Canola	plastid	21.68	19.91
CDY50237	Canola	mitochondrion	20.98	19.07
CDY65512	Canola	mitochondrion	20.98	19.07
CDX96593	Canola	mitochondrion	20.75	18.9
CDY65109	Canola	mitochondrion	20.51	18.6

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.1	GO:A0A078FQR6
UniProt:A0A078FQR6	EnsemblPlants:CDY15202	ProteinID:CDY15202	ProteinID:CDY15202.1	ncoils:Coil	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00085388001	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF25	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0004EF20DD
SEG:seg	:	:	:	:	:

Description

BnaC05g00810DPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078FQR6]

Coordinates

chrLK032052:+:413544..415179

Molecular Weight (calculated)

47296.9 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.214

Length

429 amino acids

Sequence
(BLAST)

001: MATSFSATLP LHGSQENRLL LPPIRLAPPP SSFLGFTRSL TIPSSRRLYH AHAARRSPVV GVQEVVKEKK VTNSLVCILI TKEEGLVLYE DMILGRSFED
101: MCAQMYYRGK MFGFVHLYNG QEAVSTGFIK LLTQSDSVVS TYRDHVHALS KGVSARAVMS ELFGKVTGCC RGQGGSMHMF SKEHNMLGGF AFIGEGIPVA
201: TGAAFTSKYK REVLKQDCED VTVAFFGDGT CNNGQFYECL NMAALYKLPI IFVVENNLWA IGMSHLRSTS DPEIWKKGPA FGMPGVHVDG MDVLKVREVA
301: KEAVTRARRG EGPTLVECET YRFRGHSLAD PDELRDAAEK AKYAARDPIT ALKKYLVENK LASEGELKTI EKKIDELVEE AVEFADASPQ PGRSQLLENV
401: FADPKGFGIG PDGRYRCEDP KFTQGTAQV

Best Arabidopsis Sequence Match ( AT1G01090.1 )
(BLAST)

001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV

Arabidopsis Description

PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.