CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24500
CDY31596
CDY33613
CDY55064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	CDY24500	AT1G59900.1	21798944
AT5G50850.1	CDY31596	AT1G59900.1	21798944
AT5G50850.1	CDY33613	AT1G59900.1	21798944
AT5G50850.1	CDY55064	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16348	Canola	mitochondrion	99.73	99.73
Bra022529.1-P	Field mustard	mitochondrion	98.36	98.36
CDX84881	Canola	mitochondrion	97.27	97.0
CDY45814	Canola	mitochondrion	96.99	96.73
AT5G50850.1	Thale cress	mitochondrion	95.08	95.87
CDX71636	Canola	mitochondrion	94.54	95.05
CDY05827	Canola	mitochondrion	93.17	93.68
TraesCS7D01G263900.2	Wheat	mitochondrion	83.06	83.06
TraesCS7A01G263300.1	Wheat	plastid	83.61	82.93
Solyc06g072580.2.1	Tomato	nucleus	83.06	82.83
KRH73802	Soybean	mitochondrion	81.42	82.78
TraesCS7B01G161100.1	Wheat	mitochondrion	83.33	82.66
HORVU7Hr1G055090.3	Barley	mitochondrion	83.33	82.43
KRH16935	Soybean	mitochondrion	80.87	82.22
KRH14338	Soybean	mitochondrion	80.6	81.94
Os08t0536000-01	Rice	mitochondrion	83.61	81.82
VIT_01s0146g00310.t01	Wine grape	mitochondrion	81.97	81.74
Solyc03g097680.2.1	Tomato	plastid	81.15	80.49
TraesCS5D01G299000.1	Wheat	mitochondrion	82.51	80.32
TraesCS5B01G290600.1	Wheat	mitochondrion	82.51	80.32
TraesCS5A01G291500.1	Wheat	golgi	82.51	80.32
Os09t0509200-01	Rice	mitochondrion	82.51	80.32
EER97019	Sorghum	mitochondrion	82.24	80.27
Zm00001d006107_P001	Maize	mitochondrion	81.97	80.21
KXG25507	Sorghum	mitochondrion	81.69	79.95
PGSC0003DMT400011072	Potato	mitochondrion	80.6	79.95
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.14	79.89
PGSC0003DMT400069263	Potato	mitochondrion	80.6	76.82
Zm00001d031659_P001	Maize	mitochondrion	81.97	75.57
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.54	75.12
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	81.15	71.74
Zm00001d021070_P002	Maize	mitochondrion	79.78	71.05
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	81.69	69.37
CDX90227	Canola	cytosol, mitochondrion, peroxisome	20.22	39.78
CDY54117	Canola	cytosol	12.3	38.79
CDY63670	Canola	plastid	38.25	34.74
CDY51472	Canola	plastid	34.43	34.52
CDY54115	Canola	mitochondrion, peroxisome, plastid	5.46	32.79
CDY10556	Canola	mitochondrion	31.15	31.49
CDY26291	Canola	plastid	27.05	31.43
CDY02436	Canola	mitochondrion	30.6	28.57
CDX90228	Canola	plastid	7.92	21.8
CDY54116	Canola	cytosol	1.91	17.5

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:A0A078DQI0	EnsemblPlants:CDX91560	ProteinID:CDX91560	ProteinID:CDX91560.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00152957001	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0004EE9CD2	SEG:seg	:	:

Description

BnaC02g16000D

Coordinates

chrLK031868:+:438503..441876

Molecular Weight (calculated)

39405.2 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.018

Length

366 amino acids

Sequence
(BLAST)

001: MWGILGRRAV DGGFSASSFR RMRSGLVSAR SYAAGSKEMT VRDALNSAID EEMSADPKVF VMGEEVGQYQ GAYKITKGLL EKYGPERVYD TPITEAGFTG
101: IGVGAAYAGL KPVVEFMTFN FSMQAIDHII NSAAKSNYMS AGQINVPIVF RGPNGAAAGV GAQHSQCYAA WYASVPGLKV LAPYSAEDAR GLLKAAIRDP
201: DPVVFLENEL LYGESFPISE EALDSSFCLP IGKAKIEREG KDVTITTFSK MVGFALKAAE KLAEEGISAE VINLRSIRPL DRATINASVR KTSRLVTVEE
301: GFPQHGVCAE ICASVVEESF SYLDAPVERI AGADVPMPYA ANLERLALPQ VEDIVRAAKR ACFRSK

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.