CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82215
CDX92171
CDX95810
CDY11726
CDY19583
CDY24170
CDY27539
CDY32407
CDY36943
CDY37313
CDY50076

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	CDX92171	AT3G17860.1	21798944
AT1G30120.1	CDX95810	AT3G17860.1	21798944
AT1G30120.1	CDX82215	AT3G21140.1	21798944
AT1G30120.1	CDY11726	AT3G21140.1	21798944
AT1G30120.1	CDY19583	AT3G21140.1	21798944
AT1G30120.1	CDY27539	AT3G21140.1	21798944
AT1G30120.1	CDY32407	AT3G21140.1	21798944
AT1G30120.1	CDY37313	AT3G21140.1	21798944
AT1G30120.1	CDY50076	AT3G21140.1	21798944
AT1G30120.1	CDY24170	AT3G47620.1	21798944
AT1G30120.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	45.91	99.46
CDY54115	Canola	mitochondrion, peroxisome, plastid	13.9	91.8
Zm00001d000227_P001	Maize	cytosol	70.72	89.34
Os03t0645100-01	Rice	plastid	70.47	86.85
CDY51472	Canola	plastid	77.67	85.75
AT1G30120.1	Thale cress	plastid	84.86	84.24
VIT_10s0003g03770.t01	Wine grape	plastid	78.41	80.82
KRH42550	Soybean	plastid	79.4	78.82
Solyc04g008590.2.1	Tomato	plastid	79.4	78.43
Solyc08g016750.2.1	Tomato	plastid	79.4	78.43
KRH58644	Soybean	nucleus	78.66	78.27
KRH15497	Soybean	plastid	77.92	77.53
KRH05520	Soybean	plastid	77.42	77.42
Zm00001d033225_P002	Maize	plastid	73.45	77.28
PGSC0003DMT400019358	Potato	plastid	79.16	76.5
EER93752	Sorghum	plastid	73.45	76.49
Os12t0616900-01	Rice	plastid	73.95	76.21
TraesCS5A01G374500.1	Wheat	plastid	73.45	75.32
GSMUA_Achr5P02560_001	Banana	plastid	69.23	75.2
TraesCS5B01G376400.1	Wheat	plastid	73.2	75.06
TraesCS5D01G384100.1	Wheat	golgi	73.2	75.06
EES16391	Sorghum	plastid	73.95	74.69
CDY54117	Canola	cytosol	21.34	74.14
CDY26291	Canola	plastid	56.82	72.7
TraesCS5A01G030800.1	Wheat	plastid	70.47	72.63
TraesCS5B01G030400.1	Wheat	plastid	70.47	72.26
HORVU0Hr1G009910.2	Barley	plastid	70.47	72.08
PGSC0003DMT400080554	Potato	plastid	77.42	71.56
GSMUA_Achr2P12960_001	Banana	vacuole	10.92	70.97
TraesCS5D01G039000.1	Wheat	plastid	69.98	69.63
GSMUA_Achr4P31470_001	Banana	mitochondrion	44.91	69.35
HORVU5Hr1G092920.4	Barley	plastid	72.46	62.8
CDX90228	Canola	plastid	20.1	60.9
CDY54116	Canola	cytosol	4.71	47.5
CDY05827	Canola	mitochondrion	34.74	38.46
CDY45814	Canola	mitochondrion	34.99	38.42
CDY16348	Canola	mitochondrion	34.74	38.25
CDX91560	Canola	mitochondrion	34.74	38.25
CDX71636	Canola	mitochondrion	34.49	38.19
CDX84881	Canola	mitochondrion	34.74	38.15
CDY10556	Canola	mitochondrion	27.05	30.11
CDY02436	Canola	mitochondrion	27.79	28.57

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	GO:A0A078JBV3	UniProt:A0A078JBV3	EnsemblPlants:CDY63670
ProteinID:CDY63670	ProteinID:CDY63670.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
EnsemblPlantsGene:GSBRNA2T00039529001	InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	UniParc:UPI0004EC687F	SEG:seg	:	:	:

Description

BnaCnng42420DPyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078JBV3]

Coordinates

chrLK034335:-:15125..17603

Molecular Weight (calculated)

43818.8 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.086

Length

403 amino acids

Sequence
(BLAST)

001: MSAIIHGAGA ATALSTFNSK KLVARSRTNL PGRSKRCIVA AGSDDGSKSF GSSSLSLRHS HKLIANNAVA TKADTSATTG HELLLFEALQ EGLEEEMDRD
101: PHVCVMGEDV GHYGGSYKVT KGLADKFGDL RVLDTPICEN AFTGMGIGAA MTDLRPVIEG MNMGFLLLAF NQISNNCGML HYTSGGQFTI PVVIRGPGGV
201: GRQLGAEHSQ RLESYFQSIP GIQMVACSTP YNAKGLMKAA IRSENPVILF EHVLLYNLKE KIPDEEYICN LEEAEMVRPG EHITILTYSR MRYHVMQAAK
301: TLVNKGYDPE VIDIRSLKPF DLYTIGNSVK KTHRVLIVEE CMRTGGIGAS LTAAINENFH DYLDAPVMCL SSQDVPTPYA GTLEEWTVVQ PAQIVTAVEQ
401: LCQ

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.